Detail information of GWHGAAZE010165


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD31310.10NADH-plastoquinone oxidoreductase subunit 7 protein (chloroplast) [Lonicera japonica]
Swissprottr|Q332S1|NDHH_LACSA0NAD(P)H-quinone oxidoreductase subunit H, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01358}
trEMBLtr|D3WBP4|D3WBP4_LONJA0NAD(P)H-quinone oxidoreductase subunit H, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01358}
TAIR10ATCG01110.14E-141NAD(P)H dehydrogenase subunit H

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123865740123866513-
GWHAAZE00000002mRNA123865740123866513-
GWHAAZE00000002exon123865740123866513-
GWHAAZE00000002CDS123865740123866513-
Transcript Sequence

Network for GWHGAAZE010165

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00346.20Complex1_49kDa1242551.30E-54
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05579ndhH Metabolic pathways map01100
Oxidative phosphorylationmap00190

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016651molecular_functionoxidoreductase activity, acting on NAD(P)H
GO:0048038molecular_functionquinone binding
GO:0051287molecular_functionNAD binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE010165.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30123456789Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.184
SRR3591706second leaf4.747
SRR3591707mature leaf3.341
SRR3591708Shoot apex3.769
SRR3591709Stem1.303
SRR3591710White floral bud0.830
SRR3591711White flower0.350
SRR3591712Green floral bud1.073
SRR3591713Yellow flower0.816
SRP173429 SRR8316895Juvenile bud stage 4.765
SRR8316896Juvenile bud stage 2.591
SRR8316897Juvenile bud stage 5.941
SRR8316894Third green stage 8.170
SRR8316900Third green stage 1.768
SRR8316901Third green stage 1.290
SRR8316898Complete white stage 1.310
SRR8316899Complete white stage 1.440
SRR8316903Complete white stage 1.624
SRR8316902Silver flowering stage2.351
SRR8316904Silver flowering stage2.510
SRR8316905Silver flowering stage2.167
SRR8316906Gold flowering stage 0.873
SRR8316907Gold flowering stage 0.989
SRR8316908Gold flowering stage 1.377
SRP132670SRR6706286Control0.123
SRR6706287Light intensity 50%0.189
SRR6706288Light intensity 20%0.065
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.536
CNS0095593Slightly white alabastrum(diploid) 22.292
CNS0095594Slightly white alabastrum(diploid) 33.232
CNS0095595Whole white alabastrum(diploid) 25.224
CNS0095596Whole white alabastrum(diploid) 34.277
CNS0095597Whole white alabastrum(diploid) 46.183
CNS0095598Silvery flower (diploied) 13.190
CNS0095599Silvery flower (diploied) 22.222
CNS0095600Silvery flower (diploied) 32.245
CNS0095601Golden flower (diploid) 13.336
CNS0095602Golden flower (diploid) 22.374
CNS0095603Golden flower (diploid) 32.702
CNS0095604Slightly white alabastrum(tetraploid) 14.407
CNS0095605Slightly white alabastrum(tetraploid) 23.383
CNS0095606Slightly white alabastrum(tetraploid) 33.886
CNS0095607Whole white alabastrum(tetraploid) 12.480
CNS0095608Whole white alabastrum(tetraploid) 22.650
CNS0095609Whole white alabastrum(tetraploid) 33.296
CNS0095610Silvery flower (tetraploid) 12.067
CNS0095611Silvery flower (tetraploid) 22.944
CNS0095612Silvery flower (tetraploid) 31.224
CNS0095613Golden flower (tetraploid) 12.934
CNS0095614Golden flower (tetraploid) 21.997
CNS0095615Golden flower (tetraploid) 31.372
CRA001975CRR073297Stem 12.479
CRR073298Stem 22.371
CRR073299Stem 30.885
CRR073300Leaf 11.865
CRR073301Leaf 21.940
CRR073302Leaf 30.555
CRR073303Juvenile bud 10.658
CRR073304Juvenile bud 21.244
CRR073305Juvenile bud 31.003
CRR073306Third green 10.620
CRR073307Third green 20.336
CRR073308Third green 30.986
CRR073309Second white 10.572
CRR073310Second white 21.214
CRR073311Second white 31.789
CRR073312Silver flowering 11.209
CRR073313Silver flowering 20.430
CRR073314Silver flowering 30.829
CRR073315Gold flowering 16.234
CRR073316Gold flowering 27.758
CRR073317Gold flowering 33.202
CRR073318Tawny withering 12.087
CRR073319Tawny withering 21.598
CRR073320Tawny withering 31.964