Gene detail

Detail information of GWHGAAZE010170

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	YP_008592707.1	0	ribosomal protein L2 (chloroplast) [Berberis bealei]
Swissprot	tr\|A0A398\|RK2B_COFAR	0	50S ribosomal protein L2-B, chloroplastic
trEMBL	tr\|T1WMD4\|T1WMD4_BERBE	0	50S ribosomal protein L2, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_01320}
TAIR10	ATCG01310.1	3E-138	ribosomal protein L2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123889112	123890599	+
GWHAAZE00000002	mRNA	123889112	123890599	+
GWHAAZE00000002	exon	123889112	123889507	+
GWHAAZE00000002	exon	123890069	123890599	+
GWHAAZE00000002	CDS	123889112	123889507	+
GWHAAZE00000002	CDS	123890069	123890599	+

Transcript Sequence
>GWHTAAZE010182 ATGGCAATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGGACCGCAAACGGTCAAGTAAAACCCAACCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGGAATGAAAAAAACATATATGGCAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATCCATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATACATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGATATCATCATCTACATCCAGAAAGCTGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCAATATGCCCTTAGGCACGGCCATACATAACATAGAAATGACACTTGGAAAGGGTGGACAATTAGCTAGAGCGGCGGGTGCTGTAGCAAAACTGATTTCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTAGGGTGAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAGCGTTGGCTAGGTAAGCGTCCTGTAGTAAGGGGAGTAGTTATGAACCCTGTAGACCATCCCCACGGGGGTGGGGAGGGGAAGGCCCCAATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCACTTGGAAAAAGAAGTCGAAAACGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAATAAATAG

Network for GWHGAAZE010170

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00181.24	Ribosomal_L2	40	116	3.70E-29
PF03947.19	Ribosomal_L2_C	166	283	9.30E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02886	RP-L2, MRPL2, rplB	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0015934	cellular_component	large ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome
GO:0003723	molecular_function	RNA binding
GO:0016740	molecular_function	transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.363
	SRR3591706	second leaf	0.780
	SRR3591707	mature leaf	0.648
	SRR3591708	Shoot apex	2.535
	SRR3591709	Stem	0.191
	SRR3591710	White floral bud	0.297
	SRR3591711	White flower	0.330
	SRR3591712	Green floral bud	0.873
	SRR3591713	Yellow flower	0.312
SRP173429	SRR8316895	Juvenile bud stage	16.594
	SRR8316896	Juvenile bud stage	12.307
	SRR8316897	Juvenile bud stage	17.687
	SRR8316894	Third green stage	23.198
	SRR8316900	Third green stage	7.578
	SRR8316901	Third green stage	5.406
	SRR8316898	Complete white stage	5.908
	SRR8316899	Complete white stage	2.096
	SRR8316903	Complete white stage	6.162
	SRR8316902	Silver flowering stage	8.287
	SRR8316904	Silver flowering stage	7.148
	SRR8316905	Silver flowering stage	9.435
	SRR8316906	Gold flowering stage	4.010
	SRR8316907	Gold flowering stage	4.581
	SRR8316908	Gold flowering stage	4.086
SRP132670	SRR6706286	Control	0.997
	SRR6706287	Light intensity 50%	1.517
	SRR6706288	Light intensity 20%	1.028
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	49.709
	CNS0095593	Slightly white alabastrum(diploid) 2	39.993
	CNS0095594	Slightly white alabastrum(diploid) 3	63.366
	CNS0095595	Whole white alabastrum(diploid) 2	42.445
	CNS0095596	Whole white alabastrum(diploid) 3	32.258
	CNS0095597	Whole white alabastrum(diploid) 4	39.043
	CNS0095598	Silvery flower (diploied) 1	30.329
	CNS0095599	Silvery flower (diploied) 2	29.922
	CNS0095600	Silvery flower (diploied) 3	8.685
	CNS0095601	Golden flower (diploid) 1	34.263
	CNS0095602	Golden flower (diploid) 2	8.472
	CNS0095603	Golden flower (diploid) 3	9.516
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.997
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.604
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.399
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.027
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.740
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.611
	CNS0095610	Silvery flower (tetraploid) 1	6.139
	CNS0095611	Silvery flower (tetraploid) 2	10.621
	CNS0095612	Silvery flower (tetraploid) 3	4.869
	CNS0095613	Golden flower (tetraploid) 1	12.472
	CNS0095614	Golden flower (tetraploid) 2	5.758
	CNS0095615	Golden flower (tetraploid) 3	8.666
CRA001975	CRR073297	Stem 1	31.470
	CRR073298	Stem 2	43.148
	CRR073299	Stem 3	23.297
	CRR073300	Leaf 1	29.587
	CRR073301	Leaf 2	34.739
	CRR073302	Leaf 3	16.945
	CRR073303	Juvenile bud 1	27.104
	CRR073304	Juvenile bud 2	16.406
	CRR073305	Juvenile bud 3	25.403
	CRR073306	Third green 1	14.890
	CRR073307	Third green 2	10.628
	CRR073308	Third green 3	22.023
	CRR073309	Second white 1	12.738
	CRR073310	Second white 2	33.580
	CRR073311	Second white 3	27.229
	CRR073312	Silver flowering 1	22.060
	CRR073313	Silver flowering 2	8.198
	CRR073314	Silver flowering 3	18.414
	CRR073315	Gold flowering 1	115.031
	CRR073316	Gold flowering 2	89.950
	CRR073317	Gold flowering 3	30.278
	CRR073318	Tawny withering 1	37.864
	CRR073319	Tawny withering 2	48.892
	CRR073320	Tawny withering 3	27.572