Detail information of GWHGAAZE010177


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABA96142.11.6816E-157Photosystem II P680 chlorophyll A apoprotein, putative [Oryza sativa Japonica Group]
Swissprottr|B2XWP9|PSBB_FAGEA6E-148Photosystem II CP47 reaction center protein {ECO:0000255|HAMAP-Rule:MF_01495}
trEMBLtr|Q2QW47|Q2QW47_ORYSJ6E-158Photosystem II P680 chlorophyll A apoprotein, putative {ECO:0000313|EMBL:ABA96142.1}
TAIR10ATCG00680.12E-115photosystem II reaction center protein B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123901245123902553-
GWHAAZE00000002mRNA123901245123902553-
GWHAAZE00000002exon123902541123902553-
GWHAAZE00000002exon123902100123902276-
GWHAAZE00000002exon123901492123901970-
GWHAAZE00000002exon123901245123901262-
GWHAAZE00000002CDS123902541123902553-
GWHAAZE00000002CDS123902100123902276-
GWHAAZE00000002CDS123901492123901970-
GWHAAZE00000002CDS123901245123901262-
Transcript Sequence

Network for GWHGAAZE010177

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00421.20PSII4638.10E-22
PF00421.20PSII622241.90E-79
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02704psbB Metabolic pathways map01100
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0009767biological_processphotosynthetic electron transport chain
GO:0019684biological_processphotosynthesis, light reaction
GO:0009521cellular_componentphotosystem
GO:0016020cellular_componentmembrane
GO:0016168molecular_functionchlorophyll binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.835
SRR3591706second leaf3.569
SRR3591707mature leaf5.242
SRR3591708Shoot apex3.868
SRR3591709Stem0.659
SRR3591710White floral bud0.997
SRR3591711White flower0.216
SRR3591712Green floral bud0.980
SRR3591713Yellow flower0.242
SRP173429 SRR8316895Juvenile bud stage 23.695
SRR8316896Juvenile bud stage 8.287
SRR8316897Juvenile bud stage 30.969
SRR8316894Third green stage 31.039
SRR8316900Third green stage 2.667
SRR8316901Third green stage 2.284
SRR8316898Complete white stage 7.932
SRR8316899Complete white stage 0.126
SRR8316903Complete white stage 9.726
SRR8316902Silver flowering stage8.549
SRR8316904Silver flowering stage9.555
SRR8316905Silver flowering stage7.665
SRR8316906Gold flowering stage 0.832
SRR8316907Gold flowering stage 0.437
SRR8316908Gold flowering stage 0.519
SRP132670SRR6706286Control0.827
SRR6706287Light intensity 50%1.062
SRR6706288Light intensity 20%0.912
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.847
CNS0095593Slightly white alabastrum(diploid) 211.971
CNS0095594Slightly white alabastrum(diploid) 317.071
CNS0095595Whole white alabastrum(diploid) 216.737
CNS0095596Whole white alabastrum(diploid) 311.535
CNS0095597Whole white alabastrum(diploid) 413.421
CNS0095598Silvery flower (diploied) 112.367
CNS0095599Silvery flower (diploied) 211.265
CNS0095600Silvery flower (diploied) 33.839
CNS0095601Golden flower (diploid) 110.750
CNS0095602Golden flower (diploid) 22.448
CNS0095603Golden flower (diploid) 33.158
CNS0095604Slightly white alabastrum(tetraploid) 117.974
CNS0095605Slightly white alabastrum(tetraploid) 218.094
CNS0095606Slightly white alabastrum(tetraploid) 34.517
CNS0095607Whole white alabastrum(tetraploid) 111.969
CNS0095608Whole white alabastrum(tetraploid) 218.239
CNS0095609Whole white alabastrum(tetraploid) 33.702
CNS0095610Silvery flower (tetraploid) 13.882
CNS0095611Silvery flower (tetraploid) 24.490
CNS0095612Silvery flower (tetraploid) 35.251
CNS0095613Golden flower (tetraploid) 111.310
CNS0095614Golden flower (tetraploid) 25.626
CNS0095615Golden flower (tetraploid) 33.608
CRA001975CRR073297Stem 113.022
CRR073298Stem 212.166
CRR073299Stem 36.711
CRR073300Leaf 15.841
CRR073301Leaf 27.641
CRR073302Leaf 33.986
CRR073303Juvenile bud 18.870
CRR073304Juvenile bud 26.692
CRR073305Juvenile bud 315.820
CRR073306Third green 17.640
CRR073307Third green 24.907
CRR073308Third green 39.196
CRR073309Second white 18.530
CRR073310Second white 222.399
CRR073311Second white 333.469
CRR073312Silver flowering 129.616
CRR073313Silver flowering 26.839
CRR073314Silver flowering 315.194
CRR073315Gold flowering 191.391
CRR073316Gold flowering 263.645
CRR073317Gold flowering 398.022
CRR073318Tawny withering 18.874
CRR073319Tawny withering 28.105
CRR073320Tawny withering 36.577