Detail information of GWHGAAZE010182


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrYP_004935561.11.0424E-141acetyl-CoA carboxylase beta subunit (chloroplast) [Eleutherococcus senticosus]
Swissprottr|P12219|ACCD_TOBAC1E-143Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01395}
trEMBLtr|G9IAY4|G9IAY4_9APIA4E-142Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01395}
TAIR10ATCG00500.16E-91acetyl-CoA carboxylase carboxyl transferase subunit beta

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123914263123918330-
GWHAAZE00000002mRNA123914263123918330-
GWHAAZE00000002exon123914263123914552-
GWHAAZE00000002exon123915993123918330-
GWHAAZE00000002CDS123915993123918330-
GWHAAZE00000002CDS123914263123914552-
Transcript Sequence

Network for GWHGAAZE010182

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0052


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01039.23Carboxyl_trans5957588.80E-16
PF02392.17Ycf47818732.60E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01963accD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Fatty acid metabolismmap01212
Pyruvate metabolismmap00620
Propanoate metabolismmap00640
Carbon fixation pathways in prokaryotesmap00720
Fatty acid biosynthesismap00061

Gene Ontology

GO term OntologyName
GO:0015979biological_processphotosynthesis
GO:0006633biological_processfatty acid biosynthetic process
GO:0009522cellular_componentphotosystem I
GO:0009579cellular_componentthylakoid
GO:0016021cellular_componentintegral component of membrane
GO:0009317cellular_componentacetyl-CoA carboxylase complex
GO:0003989molecular_functionacetyl-CoA carboxylase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.155
SRR3591706second leaf1.641
SRR3591707mature leaf4.176
SRR3591708Shoot apex2.084
SRR3591709Stem1.030
SRR3591710White floral bud1.251
SRR3591711White flower1.672
SRR3591712Green floral bud1.911
SRR3591713Yellow flower2.012
SRP173429 SRR8316895Juvenile bud stage 10.220
SRR8316896Juvenile bud stage 8.220
SRR8316897Juvenile bud stage 22.724
SRR8316894Third green stage 19.476
SRR8316900Third green stage 7.084
SRR8316901Third green stage 3.780
SRR8316898Complete white stage 5.361
SRR8316899Complete white stage 1.764
SRR8316903Complete white stage 5.155
SRR8316902Silver flowering stage10.447
SRR8316904Silver flowering stage8.574
SRR8316905Silver flowering stage10.568
SRR8316906Gold flowering stage 3.235
SRR8316907Gold flowering stage 3.263
SRR8316908Gold flowering stage 3.169
SRP132670SRR6706286Control2.142
SRR6706287Light intensity 50%3.139
SRR6706288Light intensity 20%3.047
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.854
CNS0095593Slightly white alabastrum(diploid) 213.097
CNS0095594Slightly white alabastrum(diploid) 316.231
CNS0095595Whole white alabastrum(diploid) 222.428
CNS0095596Whole white alabastrum(diploid) 319.584
CNS0095597Whole white alabastrum(diploid) 424.787
CNS0095598Silvery flower (diploied) 112.276
CNS0095599Silvery flower (diploied) 212.634
CNS0095600Silvery flower (diploied) 318.502
CNS0095601Golden flower (diploid) 115.552
CNS0095602Golden flower (diploid) 213.876
CNS0095603Golden flower (diploid) 315.349
CNS0095604Slightly white alabastrum(tetraploid) 126.268
CNS0095605Slightly white alabastrum(tetraploid) 220.457
CNS0095606Slightly white alabastrum(tetraploid) 320.663
CNS0095607Whole white alabastrum(tetraploid) 116.815
CNS0095608Whole white alabastrum(tetraploid) 219.363
CNS0095609Whole white alabastrum(tetraploid) 333.731
CNS0095610Silvery flower (tetraploid) 122.185
CNS0095611Silvery flower (tetraploid) 240.092
CNS0095612Silvery flower (tetraploid) 318.109
CNS0095613Golden flower (tetraploid) 123.584
CNS0095614Golden flower (tetraploid) 216.055
CNS0095615Golden flower (tetraploid) 320.735
CRA001975CRR073297Stem 123.442
CRR073298Stem 228.532
CRR073299Stem 39.329
CRR073300Leaf 126.296
CRR073301Leaf 226.991
CRR073302Leaf 313.745
CRR073303Juvenile bud 127.694
CRR073304Juvenile bud 219.547
CRR073305Juvenile bud 326.229
CRR073306Third green 125.256
CRR073307Third green 212.172
CRR073308Third green 325.664
CRR073309Second white 122.078
CRR073310Second white 248.421
CRR073311Second white 372.294
CRR073312Silver flowering 142.954
CRR073313Silver flowering 212.578
CRR073314Silver flowering 319.159
CRR073315Gold flowering 120.128
CRR073316Gold flowering 219.308
CRR073317Gold flowering 310.495
CRR073318Tawny withering 111.618
CRR073319Tawny withering 29.117
CRR073320Tawny withering 39.497