Detail information of GWHGAAZE010184


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002886876.10H+-transporting two-sector ATPase, alpha/beta subunit, central region [Arabidopsis lyrata subsp. lyrata]
Swissprottr|Q8MBM3|ATPB_CONAR0ATP synthase subunit beta, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01347}
trEMBLtr|M0ZKF0|M0ZKF0_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400002642}
TAIR10ATCG00480.12E-152ATP synthase subunit beta

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123921529123923133+
GWHAAZE00000002mRNA123921529123923133+
GWHAAZE00000002exon123921529123921682+
GWHAAZE00000002exon123921927123922751+
GWHAAZE00000002exon123922865123923133+
GWHAAZE00000002CDS123921529123921682+
GWHAAZE00000002CDS123921927123922751+
GWHAAZE00000002CDS123922865123923133+
Transcript Sequence

Network for GWHGAAZE010184

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02874.24ATP-synt_ab_N2259.80E-06
PF00006.26ATP-synt_ab512212.20E-48
PF02823.17ATP-synt_DE_N3173902.20E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02112ATPF1B, atpD Metabolic pathways map01100
Oxidative phosphorylationmap00190
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0046034biological_processATP metabolic process
GO:1902600biological_processproton transmembrane transport
GO:0015986biological_processATP synthesis coupled proton transport
GO:0045261cellular_componentproton-transporting ATP synthase complex, catalytic core F(1)
GO:0046933molecular_functionproton-transporting ATP synthase activity, rotational mechanism
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.156
SRR3591706second leaf1.139
SRR3591707mature leaf0.885
SRR3591708Shoot apex0.836
SRR3591709Stem0.156
SRR3591710White floral bud0.104
SRR3591711White flower0.165
SRR3591712Green floral bud0.148
SRR3591713Yellow flower0.208
SRP173429 SRR8316895Juvenile bud stage 6.327
SRR8316896Juvenile bud stage 2.262
SRR8316897Juvenile bud stage 8.933
SRR8316894Third green stage 8.048
SRR8316900Third green stage 0.936
SRR8316901Third green stage 0.857
SRR8316898Complete white stage 2.070
SRR8316899Complete white stage 0.279
SRR8316903Complete white stage 1.748
SRR8316902Silver flowering stage3.108
SRR8316904Silver flowering stage2.689
SRR8316905Silver flowering stage2.508
SRR8316906Gold flowering stage 0.279
SRR8316907Gold flowering stage 0.328
SRR8316908Gold flowering stage 0.592
SRP132670SRR6706286Control0.058
SRR6706287Light intensity 50%0.230
SRR6706288Light intensity 20%0.218
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.091
CNS0095593Slightly white alabastrum(diploid) 21.924
CNS0095594Slightly white alabastrum(diploid) 32.879
CNS0095595Whole white alabastrum(diploid) 23.136
CNS0095596Whole white alabastrum(diploid) 32.089
CNS0095597Whole white alabastrum(diploid) 42.492
CNS0095598Silvery flower (diploied) 11.660
CNS0095599Silvery flower (diploied) 21.408
CNS0095600Silvery flower (diploied) 31.134
CNS0095601Golden flower (diploid) 11.769
CNS0095602Golden flower (diploid) 21.104
CNS0095603Golden flower (diploid) 31.370
CNS0095604Slightly white alabastrum(tetraploid) 13.292
CNS0095605Slightly white alabastrum(tetraploid) 23.519
CNS0095606Slightly white alabastrum(tetraploid) 31.388
CNS0095607Whole white alabastrum(tetraploid) 12.341
CNS0095608Whole white alabastrum(tetraploid) 21.866
CNS0095609Whole white alabastrum(tetraploid) 31.126
CNS0095610Silvery flower (tetraploid) 10.934
CNS0095611Silvery flower (tetraploid) 21.062
CNS0095612Silvery flower (tetraploid) 30.758
CNS0095613Golden flower (tetraploid) 11.407
CNS0095614Golden flower (tetraploid) 20.756
CNS0095615Golden flower (tetraploid) 30.514
CRA001975CRR073297Stem 15.954
CRR073298Stem 27.834
CRR073299Stem 32.919
CRR073300Leaf 13.112
CRR073301Leaf 23.974
CRR073302Leaf 31.817
CRR073303Juvenile bud 12.840
CRR073304Juvenile bud 22.478
CRR073305Juvenile bud 33.737
CRR073306Third green 13.092
CRR073307Third green 21.894
CRR073308Third green 32.867
CRR073309Second white 13.130
CRR073310Second white 26.167
CRR073311Second white 39.152
CRR073312Silver flowering 18.693
CRR073313Silver flowering 22.433
CRR073314Silver flowering 32.954
CRR073315Gold flowering 141.850
CRR073316Gold flowering 234.649
CRR073317Gold flowering 370.121
CRR073318Tawny withering 13.669
CRR073319Tawny withering 22.366
CRR073320Tawny withering 32.747