Gene detail

Detail information of GWHGAAZE010188

Functional Annotation

Database	Orthologs	Annotation
Nr	ADD30796.1	photosystem I P700 apoprotein A2 (chloroplast) [Lonicera japonica]
Swissprot	tr\|Q09FW2\|PSAB_NANDO	Photosystem I P700 chlorophyll a apoprotein A2 {ECO:0000255\|HAMAP-Rule:MF_00482}
trEMBL	tr\|D3WBQ5\|D3WBQ5_LONJA	Photosystem I P700 chlorophyll a apoprotein A2 {ECO:0000256\|HAMAP-Rule:MF_00482}
TAIR10	ATCG00340.1	Photosystem I, PsaA/PsaB protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123936432	123938500	+
GWHAAZE00000002	mRNA	123936432	123938500	+
GWHAAZE00000002	exon	123936432	123938345	+
GWHAAZE00000002	exon	123938447	123938500	+
GWHAAZE00000002	CDS	123936432	123938345	+
GWHAAZE00000002	CDS	123938447	123938500	+

Transcript Sequence
>GWHTAAZE010200 ATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCCCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAGGAACGTCTTTATCAGAATATTTTTGCTTCTCACTTCGGGCAATTAGCAATAATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGGAATTTTGAGTCATGGGTACAGGACCCTTTACATGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCGGCTGTAGAAGCTTTTACTCGAGGAGGTGCTCTTGGCCCAGTGAATATCGCCTATTCCGGTGTTTATCAGTGGTGGTATACAATAGGTTTACGCACTAATGAAGATCTTTATACTGGCGCCCTTTTTCTATTATTTCTTTCTGCCATATCCTTAATAGCAGGTTGGTTACACCTACAACCGAAATGGAAACCAAGCGTTTCATGGTTCAAAAATGCGGAATCTCGTCTCAATCATCATTTGTCAGGACTCTTCGGCGTAAGTTCCTTGGCTTGGACAGGACATTTAGTACATGTCGCTATTCCTGGATCCAGGGGGCAGTACGTTCGATGGAATAATTTCTTAGATGTAGTACCACATCCCCAAGGCTTAGGCCCGCTTTTTACAGGTCAGTGGAATCTTTATGCTCAAAATCCCGATTCAACTAGTCATTTATTTGGTACCTCCCAAGGAGCAGGAACTGCTATTCTAACCCTTCTCGGGGGATTTCATCCACAAACGCAAAGTTTATGGCTGACTGATATGGCTCATCATCATTTAGCTATTGCATTTATTTTTCTCGTTGCAGGGCATATGTATAGAACTAACTTCGGGATTGGGCACAGTATGAAAGATCTTTTAGATGTGCATCTTCCCCCCGGGGGGCGATTGGGACGTGGGCATAGGGGTCTTTATGACACAATCAATAATTCGATTCATTTTCAATTAGGCCTTGCCCTAGCTTCTTTAGGGGTTATTACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCATTCATAGCACAAGACTTTACTACTCAAGCTGCGTTATATACTCATCACCAATACATCGCAGGATTCATCATGACAGGAGCTTTTGCTCATGGAGCTATATTTTTCATTAGAGATTACAATCCGGAACAGAATGAGGATAATGTATTGGCAAGAATGTTAGACCATAAAGAAGCTATCATATCTCATTTAAGTTGGGCCAGCCTCTTTCTGGGGTTCCATACTTTGGGACTTTATGTTCATAATGATGTCATGCTTGCCTTTGGTACTCCGGAGAAACAAATCTTGATCGAACCTATATTTGCTCAATGGATACAATCTGCTCATGGTAAAACTTCCTATGGGTTCGATGTACTTTTATCTTCAACGAACGGCCCGGCATTCAATGCTGGTCGAAGCATATGGTTGCCGGGTTGGTTAAATGCTATTAATGAGAATAGTAATTCACTATTCTTAACAATAGGTCCCGGAGACTTTTTGGTTCATCATGCTATTGCTCTGGGTTTACATACAACTACATTGATCTTAGTAAAAGGTGCTTTAGATGCACGCGGTTCCAAGTTAATGCCAGATAAAAAAGATTTCGGTTATAGTTTTCCGTGCGATGGCCCGGGGCGAGGCGGTACTTGTGATATTTCGGCTTGGGACGCATTTTATTTGGCAGTTTTTTGGATGTTAAATACTATTGGATGGGTTACTTTTTATTGGCATTGGAAGCATATCACATTATGGCAGGGTAACGTTTCGCAGTTTAATGAATCTTCCACTTATTTGATGGGCTGGTTAAGAGATTATTTATGGTTAAACTCTTCACAACTTATCAATGGATATAACCCTTTGGAATTGATTGAAACTTTAACATGGGCTCATGAGCGTACACCTTGGCCAATTTGA

Network for GWHGAAZE010188

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00223.20	PsaA_PsaB	8	636	5.20E-296

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02690	psaB	Metabolic pathways	map01100
K02690	psaB	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0015979	biological_process	photosynthesis
GO:0009522	cellular_component	photosystem I
GO:0009579	cellular_component	thylakoid
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.560
	SRR3591706	second leaf	2.163
	SRR3591707	mature leaf	2.394
	SRR3591708	Shoot apex	4.474
	SRR3591709	Stem	0.672
	SRR3591710	White floral bud	0.360
	SRR3591711	White flower	0.379
	SRR3591712	Green floral bud	0.484
	SRR3591713	Yellow flower	0.406
SRP173429	SRR8316895	Juvenile bud stage	26.556
	SRR8316896	Juvenile bud stage	11.323
	SRR8316897	Juvenile bud stage	37.881
	SRR8316894	Third green stage	41.297
	SRR8316900	Third green stage	2.865
	SRR8316901	Third green stage	2.294
	SRR8316898	Complete white stage	7.519
	SRR8316899	Complete white stage	0.352
	SRR8316903	Complete white stage	9.269
	SRR8316902	Silver flowering stage	13.686
	SRR8316904	Silver flowering stage	15.345
	SRR8316905	Silver flowering stage	12.826
	SRR8316906	Gold flowering stage	0.484
	SRR8316907	Gold flowering stage	0.700
	SRR8316908	Gold flowering stage	0.285
SRP132670	SRR6706286	Control	0.854
	SRR6706287	Light intensity 50%	0.947
	SRR6706288	Light intensity 20%	0.846
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.987
	CNS0095593	Slightly white alabastrum(diploid) 2	5.703
	CNS0095594	Slightly white alabastrum(diploid) 3	7.198
	CNS0095595	Whole white alabastrum(diploid) 2	10.699
	CNS0095596	Whole white alabastrum(diploid) 3	7.232
	CNS0095597	Whole white alabastrum(diploid) 4	9.140
	CNS0095598	Silvery flower (diploied) 1	8.581
	CNS0095599	Silvery flower (diploied) 2	9.652
	CNS0095600	Silvery flower (diploied) 3	5.152
	CNS0095601	Golden flower (diploid) 1	9.115
	CNS0095602	Golden flower (diploid) 2	2.966
	CNS0095603	Golden flower (diploid) 3	4.837
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.786
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.084
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.191
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.209
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.265
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.988
	CNS0095610	Silvery flower (tetraploid) 1	3.654
	CNS0095611	Silvery flower (tetraploid) 2	4.787
	CNS0095612	Silvery flower (tetraploid) 3	2.683
	CNS0095613	Golden flower (tetraploid) 1	8.169
	CNS0095614	Golden flower (tetraploid) 2	3.228
	CNS0095615	Golden flower (tetraploid) 3	1.462
CRA001975	CRR073297	Stem 1	6.775
	CRR073298	Stem 2	8.368
	CRR073299	Stem 3	2.235
	CRR073300	Leaf 1	2.183
	CRR073301	Leaf 2	2.582
	CRR073302	Leaf 3	2.001
	CRR073303	Juvenile bud 1	4.853
	CRR073304	Juvenile bud 2	2.859
	CRR073305	Juvenile bud 3	8.366
	CRR073306	Third green 1	4.161
	CRR073307	Third green 2	2.393
	CRR073308	Third green 3	4.854
	CRR073309	Second white 1	6.060
	CRR073310	Second white 2	16.449
	CRR073311	Second white 3	47.952
	CRR073312	Silver flowering 1	30.416
	CRR073313	Silver flowering 2	7.199
	CRR073314	Silver flowering 3	19.647
	CRR073315	Gold flowering 1	27.605
	CRR073316	Gold flowering 2	29.805
	CRR073317	Gold flowering 3	44.803
	CRR073318	Tawny withering 1	5.370
	CRR073319	Tawny withering 2	3.633
	CRR073320	Tawny withering 3	3.816