Detail information of GWHGAAZE010199


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGU12572.10photosystem II D1 subunit, partial (chloroplast) [Silene wolgensis]
Swissprottr|A4GYN9|PSBA_POPTR0Photosystem II protein D1 {ECO:0000255|HAMAP-Rule:MF_01379} (Precursor)
trEMBLtr|T1WEA5|T1WEA5_9CARY0Photosystem Q(B) protein {ECO:0000256|RuleBase:RU004332} (Fragment)
TAIR10ATCG00020.10photosystem II reaction center protein A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene124004645124005685-
GWHAAZE00000002mRNA124004645124005685-
GWHAAZE00000002exon124004645124005685-
GWHAAZE00000002CDS124004645124005685-
Transcript Sequence

Network for GWHGAAZE010199

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00124.20Photo_RC283272.60E-98
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02703psbA Metabolic pathways map01100
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0009772biological_processphotosynthetic electron transport in photosystem II
GO:0019684biological_processphotosynthesis, light reaction
GO:0045156molecular_functionelectron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0009055molecular_functionelectron transfer activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.646
SRR3591706second leaf17.367
SRR3591707mature leaf84.241
SRR3591708Shoot apex12.642
SRR3591709Stem5.718
SRR3591710White floral bud3.766
SRR3591711White flower8.164
SRR3591712Green floral bud4.998
SRR3591713Yellow flower11.885
SRP173429 SRR8316895Juvenile bud stage 304.612
SRR8316896Juvenile bud stage 133.481
SRR8316897Juvenile bud stage 506.409
SRR8316894Third green stage 453.399
SRR8316900Third green stage 43.641
SRR8316901Third green stage 36.454
SRR8316898Complete white stage 299.440
SRR8316899Complete white stage 10.462
SRR8316903Complete white stage 214.537
SRR8316902Silver flowering stage546.690
SRR8316904Silver flowering stage424.656
SRR8316905Silver flowering stage425.120
SRR8316906Gold flowering stage 30.598
SRR8316907Gold flowering stage 22.115
SRR8316908Gold flowering stage 30.113
SRP132670SRR6706286Control5.726
SRR6706287Light intensity 50%7.983
SRR6706288Light intensity 20%6.022
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1173.026
CNS0095593Slightly white alabastrum(diploid) 2126.145
CNS0095594Slightly white alabastrum(diploid) 3152.236
CNS0095595Whole white alabastrum(diploid) 2188.228
CNS0095596Whole white alabastrum(diploid) 3132.993
CNS0095597Whole white alabastrum(diploid) 4139.752
CNS0095598Silvery flower (diploied) 1151.527
CNS0095599Silvery flower (diploied) 2147.757
CNS0095600Silvery flower (diploied) 3168.997
CNS0095601Golden flower (diploid) 1193.144
CNS0095602Golden flower (diploid) 2136.830
CNS0095603Golden flower (diploid) 3139.174
CNS0095604Slightly white alabastrum(tetraploid) 1238.874
CNS0095605Slightly white alabastrum(tetraploid) 2234.643
CNS0095606Slightly white alabastrum(tetraploid) 354.943
CNS0095607Whole white alabastrum(tetraploid) 1196.499
CNS0095608Whole white alabastrum(tetraploid) 2301.937
CNS0095609Whole white alabastrum(tetraploid) 352.291
CNS0095610Silvery flower (tetraploid) 1115.899
CNS0095611Silvery flower (tetraploid) 2184.818
CNS0095612Silvery flower (tetraploid) 3117.511
CNS0095613Golden flower (tetraploid) 1334.131
CNS0095614Golden flower (tetraploid) 2183.834
CNS0095615Golden flower (tetraploid) 3143.141
CRA001975CRR073297Stem 1114.910
CRR073298Stem 2154.073
CRR073299Stem 389.184
CRR073300Leaf 189.560
CRR073301Leaf 299.130
CRR073302Leaf 3103.604
CRR073303Juvenile bud 1145.779
CRR073304Juvenile bud 2199.829
CRR073305Juvenile bud 3200.009
CRR073306Third green 1407.884
CRR073307Third green 2407.152
CRR073308Third green 3403.364
CRR073309Second white 12322.259
CRR073310Second white 21733.165
CRR073311Second white 31740.964
CRR073312Silver flowering 11673.306
CRR073313Silver flowering 21281.237
CRR073314Silver flowering 3913.825
CRR073315Gold flowering 12914.110
CRR073316Gold flowering 22491.275
CRR073317Gold flowering 34607.354
CRR073318Tawny withering 1146.266
CRR073319Tawny withering 2154.986
CRR073320Tawny withering 3145.550