Gene detail

Detail information of GWHGAAZE010205

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADD31166.1	1.083E-111	RNA polymerase beta' subunit protein (chloroplast) [Lonicera japonica]
Swissprot	tr\|A0ZZ26\|RPOC1_GOSBA	7E-97	DNA-directed RNA polymerase subunit beta' {ECO:0000255\|HAMAP-Rule:MF_01323}
trEMBL	tr\|D3WBT6\|D3WBT6_LONJA	4E-112	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU004279}
TAIR10	ATCG00180.1	2E-68	DNA-directed RNA polymerase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	124026895	124028629	-
GWHAAZE00000002	mRNA	124026895	124028629	-
GWHAAZE00000002	exon	124026895	124027508	-
GWHAAZE00000002	exon	124027824	124027882	-
GWHAAZE00000002	exon	124028529	124028629	-
GWHAAZE00000002	CDS	124028529	124028629	-
GWHAAZE00000002	CDS	124027824	124027882	-
GWHAAZE00000002	CDS	124026895	124027508	-

Transcript Sequence
>GWHTAAZE010217 ATGCAAAAGACGACCCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGAAGATATCAAATGGGCTACATCAAACTCGCATGCCCAGTCTAATAAAAGGAAGACGCAATCAATGAAATCTTGCTTGGTCTTTACTGGGAACTTGAGTGCTATCCGAGAACAATTAGCCGATCTAGATTTACGAATTATTGTAGATTATTCGTTGGTAGAATGGAAAGAGTTGGGGGAAGAAGGGCTTACAGGGAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAACATTTTTTGGCTAGACGCATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCAGAATGGATGGTTTTGTGTCTATTACCAGTTCTTCCTCCTGAGTTGAGACCGCTTTTTCGGACAGATAGTAGTAGGCTAGTGAGGTCGGATATTAATGAACTCTATAGACGAGTTATCTATCGGAACAATACTCTTACTGATCTATTAACAACAAGTCGATTTGCGCCGGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATTCACTTCTTGATAATGGAATAGGCGGGCAACCAACGAAGGACGGTTCTAATCAAGTTTACAAGTCGTTTTCAGATAGAATTGCAGGTAAAGAGGAAGATTTCGTGAGACTCTGCTTGGCAAACGAGTCGATTATTCAGGGCGTTCCGTTATTGTCGTGGGCCCTTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATAG

Network for GWHGAAZE010205

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04997.13	RNA_pol_Rpb1_1	106	221	1.80E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03046	rpoC	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.132
	SRR3591707	mature leaf	0.087
	SRR3591708	Shoot apex	0.378
	SRR3591709	Stem	0.013
	SRR3591710	White floral bud	0.063
	SRR3591711	White flower	0.124
	SRR3591712	Green floral bud	0.111
	SRR3591713	Yellow flower	0.130
SRP173429	SRR8316895	Juvenile bud stage	1.258
	SRR8316896	Juvenile bud stage	0.828
	SRR8316897	Juvenile bud stage	2.646
	SRR8316894	Third green stage	2.107
	SRR8316900	Third green stage	0.606
	SRR8316901	Third green stage	0.398
	SRR8316898	Complete white stage	0.828
	SRR8316899	Complete white stage	0.108
	SRR8316903	Complete white stage	0.493
	SRR8316902	Silver flowering stage	1.635
	SRR8316904	Silver flowering stage	1.116
	SRR8316905	Silver flowering stage	1.162
	SRR8316906	Gold flowering stage	0.098
	SRR8316907	Gold flowering stage	0.047
	SRR8316908	Gold flowering stage	0.061
SRP132670	SRR6706286	Control	0.045
	SRR6706287	Light intensity 50%	0.061
	SRR6706288	Light intensity 20%	0.067
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.672
	CNS0095593	Slightly white alabastrum(diploid) 2	0.402
	CNS0095594	Slightly white alabastrum(diploid) 3	0.614
	CNS0095595	Whole white alabastrum(diploid) 2	1.420
	CNS0095596	Whole white alabastrum(diploid) 3	1.233
	CNS0095597	Whole white alabastrum(diploid) 4	1.007
	CNS0095598	Silvery flower (diploied) 1	0.540
	CNS0095599	Silvery flower (diploied) 2	0.896
	CNS0095600	Silvery flower (diploied) 3	0.517
	CNS0095601	Golden flower (diploid) 1	0.709
	CNS0095602	Golden flower (diploid) 2	0.422
	CNS0095603	Golden flower (diploid) 3	0.479
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.833
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.544
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.359
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.604
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.602
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.476
	CNS0095610	Silvery flower (tetraploid) 1	0.220
	CNS0095611	Silvery flower (tetraploid) 2	0.721
	CNS0095612	Silvery flower (tetraploid) 3	0.229
	CNS0095613	Golden flower (tetraploid) 1	0.522
	CNS0095614	Golden flower (tetraploid) 2	0.390
	CNS0095615	Golden flower (tetraploid) 3	0.117
CRA001975	CRR073297	Stem 1	0.497
	CRR073298	Stem 2	0.302
	CRR073299	Stem 3	0.279
	CRR073300	Leaf 1	0.242
	CRR073301	Leaf 2	0.206
	CRR073302	Leaf 3	0.212
	CRR073303	Juvenile bud 1	0.789
	CRR073304	Juvenile bud 2	0.760
	CRR073305	Juvenile bud 3	0.498
	CRR073306	Third green 1	0.583
	CRR073307	Third green 2	0.409
	CRR073308	Third green 3	0.518
	CRR073309	Second white 1	0.102
	CRR073310	Second white 2	1.193
	CRR073311	Second white 3	1.597
	CRR073312	Silver flowering 1	0.880
	CRR073313	Silver flowering 2	0.108
	CRR073314	Silver flowering 3	0.368
	CRR073315	Gold flowering 1	0.730
	CRR073316	Gold flowering 2	0.771
	CRR073317	Gold flowering 3	1.167
	CRR073318	Tawny withering 1	0.207
	CRR073319	Tawny withering 2	0.101
	CRR073320	Tawny withering 3	0.083