Detail information of GWHGAAZE010211


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006841199.18.7387E-144hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
Swissprottr|Q49KZ4|NDHK_EUCGG4E-80NAD(P)H-quinone oxidoreductase subunit K, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01356}
trEMBLtr|W1P5D9|W1P5D9_AMBTC3E-144Uncharacterized protein {ECO:0000313|EMBL:ERN02874.1}
TAIR10ATCG00430.16E-59photosystem II reaction center protein G

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene124054919124055923-
GWHAAZE00000002mRNA124054919124055923-
GWHAAZE00000002exon124054919124055217-
GWHAAZE00000002exon124055527124055923-
GWHAAZE00000002CDS124055527124055923-
GWHAAZE00000002CDS124054919124055217-
Transcript Sequence

Network for GWHGAAZE010211

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01058.23Oxidored_q63701.20E-12
PF00329.20Complex1_30kDa1382212.70E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05582ndhK Metabolic pathways map01100
Oxidative phosphorylationmap00190

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
GO:0048038molecular_functionquinone binding
GO:0051539molecular_function4 iron, 4 sulfur cluster binding
GO:0016651molecular_functionoxidoreductase activity, acting on NAD(P)H
GO:0051536molecular_functioniron-sulfur cluster binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.846
SRR3591706second leaf2.180
SRR3591707mature leaf3.363
SRR3591708Shoot apex1.698
SRR3591709Stem0.575
SRR3591710White floral bud0.100
SRR3591711White flower0.122
SRR3591712Green floral bud0.269
SRR3591713Yellow flower0.418
SRP173429 SRR8316895Juvenile bud stage 4.171
SRR8316896Juvenile bud stage 1.509
SRR8316897Juvenile bud stage 5.899
SRR8316894Third green stage 5.356
SRR8316900Third green stage 1.201
SRR8316901Third green stage 0.657
SRR8316898Complete white stage 3.201
SRR8316899Complete white stage 0.460
SRR8316903Complete white stage 1.859
SRR8316902Silver flowering stage4.635
SRR8316904Silver flowering stage4.072
SRR8316905Silver flowering stage3.307
SRR8316906Gold flowering stage 0.745
SRR8316907Gold flowering stage 0.416
SRR8316908Gold flowering stage 0.682
SRP132670SRR6706286Control0.142
SRR6706287Light intensity 50%0.101
SRR6706288Light intensity 20%0.131
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.802
CNS0095593Slightly white alabastrum(diploid) 21.288
CNS0095594Slightly white alabastrum(diploid) 32.137
CNS0095595Whole white alabastrum(diploid) 22.456
CNS0095596Whole white alabastrum(diploid) 32.546
CNS0095597Whole white alabastrum(diploid) 42.188
CNS0095598Silvery flower (diploied) 11.492
CNS0095599Silvery flower (diploied) 23.320
CNS0095600Silvery flower (diploied) 31.194
CNS0095601Golden flower (diploid) 12.293
CNS0095602Golden flower (diploid) 21.014
CNS0095603Golden flower (diploid) 30.546
CNS0095604Slightly white alabastrum(tetraploid) 12.189
CNS0095605Slightly white alabastrum(tetraploid) 23.669
CNS0095606Slightly white alabastrum(tetraploid) 31.838
CNS0095607Whole white alabastrum(tetraploid) 11.544
CNS0095608Whole white alabastrum(tetraploid) 22.392
CNS0095609Whole white alabastrum(tetraploid) 31.067
CNS0095610Silvery flower (tetraploid) 10.667
CNS0095611Silvery flower (tetraploid) 20.820
CNS0095612Silvery flower (tetraploid) 30.720
CNS0095613Golden flower (tetraploid) 11.537
CNS0095614Golden flower (tetraploid) 20.849
CNS0095615Golden flower (tetraploid) 30.692
CRA001975CRR073297Stem 11.730
CRR073298Stem 22.307
CRR073299Stem 31.726
CRR073300Leaf 11.363
CRR073301Leaf 21.669
CRR073302Leaf 30.854
CRR073303Juvenile bud 12.778
CRR073304Juvenile bud 21.517
CRR073305Juvenile bud 32.962
CRR073306Third green 13.417
CRR073307Third green 21.156
CRR073308Third green 34.039
CRR073309Second white 13.399
CRR073310Second white 26.109
CRR073311Second white 39.150
CRR073312Silver flowering 15.373
CRR073313Silver flowering 22.074
CRR073314Silver flowering 31.558
CRR073315Gold flowering 136.553
CRR073316Gold flowering 226.014
CRR073317Gold flowering 327.489
CRR073318Tawny withering 12.136
CRR073319Tawny withering 21.512
CRR073320Tawny withering 32.768