Gene detail

Detail information of GWHGAAZE010213

Functional Annotation

Database	Orthologs	Annotation
Nr	EMS54729.1	Ribulose bisphosphate carboxylase large chain [Triticum urartu]
Swissprot	tr\|Q05798\|RBL_CERDE	Ribulose bisphosphate carboxylase large chain {ECO:0000255\|HAMAP-Rule:MF_01338} (Precursor)
trEMBL	tr\|M8A2T1\|M8A2T1_TRIUA	Uncharacterized protein {ECO:0000313\|EnsemblPlants:TRIUR3_00065-P1}
TAIR10	ATCG00490.1	ribulose-bisphosphate carboxylases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	124061375	124062803	+
GWHAAZE00000002	mRNA	124061375	124062803	+
GWHAAZE00000002	exon	124061375	124062107	+
GWHAAZE00000002	exon	124062274	124062803	+
GWHAAZE00000002	CDS	124061375	124062107	+
GWHAAZE00000002	CDS	124062274	124062803	+

Transcript Sequence
>GWHTAAZE010225 ATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCGGGTGTTAAAGATTACAAATTGACTTATTATACTCCTGACTATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCCGGAGTTCCGCCTGAAGAAGCGGGGGCCGCGGTAGCTGCTGAATCTTCAACCGGTACATGGACAACTGTGTGGACCGATGGACTTACCAGCCTTGATCGTTACAAAGGGCGATGCTACCACATCGAGCCCGTTGCTGGAGAAGAAAATCAATTTATTGCTTATGTAGCTTACCCATTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCTATTGTGGGTAATGTATTTGGGTTCAAAGCCCTGCGCGCTCTACGTCTGGAAGATCTGCGAATCCCTGTCTCTTATGTTAAAACTTTCCAAGGCCCGCCTCATGGTATCCAAGTTGAGAGAGATAAATTGAACAAGTACGGCCGCCCCCTGTTGGGATGTACTATTAAACCTAAATTGGGGTTATCTGCTAAAAACTACGGTAGGGCGGTTTATGAATGTCTACGTGGTGGACTTGATTTTACCAAAGATGATGAGAACGTGAACTCCCAACCATTTATGCGTTGGAGAGATCGTTTCTTATTTTGTGCCGAAGCCCTTTTTAAAGCACAAGTTGAAACAGGTGAAATCAAAGGGCATTACTTGAATGCTACTGCAGTTATTGATAGACAGAAGAATCATGGTATACACTTTCGTGTACTAGCTAAAGCGTTACGTATGTCTGGTGGAGATCATATTCACTCCGGTACCGTAGTAGGTAAACTTGAAGGGGAAAGAGAGATCACTTTGGGCTTTGTTGATTTACTGCGCGATGATTTTATTGAAAAAGATCGAAGTCGCGGTATTTATTTCACTCAAGATTGGGTCTCTCTACCGGGTGTTCTGCCCGTGGCTTCGGGGGGTATTCACGTTTGGCATATGCCCGCTTTGACCGAGATCTTTGGAGATGATTCCGTCCTACAGTTCGGCGGAGGAACTTTAGGACACCCTTGGGGAAATGCACCTGGTGCCGTAGCTAATCGAGTCGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGGCGTGATCTTGCTCGTGACGGTAATGAAATTATCCGTAGGGCTAGCAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAGGTATGGAAGGAGATCAAATTTGAATTTCAAGCAATGGATACTTTGTAA

Network for GWHGAAZE010213

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02788.17	RuBisCO_large_N	24	144	1.30E-45
PF00016.21	RuBisCO_large	154	244	6.50E-40
PF00016.21	RuBisCO_large	243	407	3.90E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01601	rbcL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0015977	biological_process	carbon fixation
GO:0000287	molecular_function	magnesium ion binding
GO:0016984	molecular_function	ribulose-bisphosphate carboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.616
	SRR3591706	second leaf	14.330
	SRR3591707	mature leaf	9.910
	SRR3591708	Shoot apex	13.598
	SRR3591709	Stem	2.797
	SRR3591710	White floral bud	1.126
	SRR3591711	White flower	1.353
	SRR3591712	Green floral bud	1.898
	SRR3591713	Yellow flower	1.788
SRP173429	SRR8316895	Juvenile bud stage	113.256
	SRR8316896	Juvenile bud stage	34.467
	SRR8316897	Juvenile bud stage	160.423
	SRR8316894	Third green stage	158.019
	SRR8316900	Third green stage	11.619
	SRR8316901	Third green stage	10.687
	SRR8316898	Complete white stage	72.955
	SRR8316899	Complete white stage	2.661
	SRR8316903	Complete white stage	47.537
	SRR8316902	Silver flowering stage	81.559
	SRR8316904	Silver flowering stage	63.347
	SRR8316905	Silver flowering stage	84.114
	SRR8316906	Gold flowering stage	1.799
	SRR8316907	Gold flowering stage	1.382
	SRR8316908	Gold flowering stage	1.921
SRP132670	SRR6706286	Control	4.862
	SRR6706287	Light intensity 50%	7.718
	SRR6706288	Light intensity 20%	5.760
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.237
	CNS0095593	Slightly white alabastrum(diploid) 2	22.113
	CNS0095594	Slightly white alabastrum(diploid) 3	31.022
	CNS0095595	Whole white alabastrum(diploid) 2	48.209
	CNS0095596	Whole white alabastrum(diploid) 3	33.397
	CNS0095597	Whole white alabastrum(diploid) 4	39.357
	CNS0095598	Silvery flower (diploied) 1	28.068
	CNS0095599	Silvery flower (diploied) 2	31.952
	CNS0095600	Silvery flower (diploied) 3	11.968
	CNS0095601	Golden flower (diploid) 1	26.611
	CNS0095602	Golden flower (diploid) 2	6.590
	CNS0095603	Golden flower (diploid) 3	10.530
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.370
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.277
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.308
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.035
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.361
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.974
	CNS0095610	Silvery flower (tetraploid) 1	9.124
	CNS0095611	Silvery flower (tetraploid) 2	11.764
	CNS0095612	Silvery flower (tetraploid) 3	9.138
	CNS0095613	Golden flower (tetraploid) 1	24.297
	CNS0095614	Golden flower (tetraploid) 2	12.183
	CNS0095615	Golden flower (tetraploid) 3	7.471
CRA001975	CRR073297	Stem 1	37.720
	CRR073298	Stem 2	38.007
	CRR073299	Stem 3	14.654
	CRR073300	Leaf 1	13.741
	CRR073301	Leaf 2	16.208
	CRR073302	Leaf 3	17.261
	CRR073303	Juvenile bud 1	34.067
	CRR073304	Juvenile bud 2	29.087
	CRR073305	Juvenile bud 3	47.072
	CRR073306	Third green 1	43.107
	CRR073307	Third green 2	19.646
	CRR073308	Third green 3	51.007
	CRR073309	Second white 1	23.979
	CRR073310	Second white 2	80.201
	CRR073311	Second white 3	110.551
	CRR073312	Silver flowering 1	87.844
	CRR073313	Silver flowering 2	19.913
	CRR073314	Silver flowering 3	52.978
	CRR073315	Gold flowering 1	190.657
	CRR073316	Gold flowering 2	176.760
	CRR073317	Gold flowering 3	218.667
	CRR073318	Tawny withering 1	20.531
	CRR073319	Tawny withering 2	14.950
	CRR073320	Tawny withering 3	15.908