Gene detail

Detail information of GWHGAAZE010216

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009787473.1	0	PREDICTED: F-box protein SKIP16 [Nicotiana sylvestris]
Swissprot	tr\|Q9LND7\|SKI16_ARATH	0	F-box protein SKIP16
trEMBL	tr\|M5XWA7\|M5XWA7_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23460.1}
TAIR10	AT1G06110.1	3E-149	SKP1/ASK-interacting protein 16

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	28153	37823	+
GWHAAZE00000003	mRNA	28153	37823	+
GWHAAZE00000003	exon	28153	28356	+
GWHAAZE00000003	exon	32066	32788	+
GWHAAZE00000003	exon	33393	33608	+
GWHAAZE00000003	exon	37686	37823	+
GWHAAZE00000003	CDS	28153	28356	+
GWHAAZE00000003	CDS	32066	32788	+
GWHAAZE00000003	CDS	33393	33608	+
GWHAAZE00000003	CDS	37686	37823	+

Transcript Sequence
>GWHTAAZE010228 ATGGATTTGGAGAGTGCAGGAGGTTTAGCAATTCACACAATCATATCCAAATTGGGACCTAATGATACAGCTGCAGTTGCCTGTGTGAGCAAGAGGTTTAGGGTTTATGCATCTGATGATTCTCACTGGTCCAAATTCTGTGCCGATGATCTCCACCTCTCTTCCCCTCAAAACCCTAATGGAAACCCCACCAATTCCTTCAAGGAAGCTTATCAAACATGGCGGGATTCTTTTCATATGTATCCTTGGTCCCTGGTTAAACGGGTTAAAAGATGCTGGGGAAGACTTCAAAGCTGGTTGGCAGTGAATTTCCCAGAAGCCCTAGGTACCTTGCGCAAGGGTGCATCTGAGGATGAAATAAATGAGTTGGAGAAGTGTTTTAAAGTGAAACTGCCTCTTCCTACAAGAGTTATCTATCGCTTTTGTGATGGTCAGGAAGTACCAAGTATAGAACTCATTGATCACATGCGTGGAGCTTCATTGGGCCTTATTGGAGGTTATTGTTTTTATGACCACATGGTGAATGTGTTCTTGTTGCCCTTGAAACATGTTATGGTAGAAACAGGATATATTGTCCGTCGCCTTGGATTCAGCAGCAGAGTTGAATATATCGTCGTTGCATCTTCTTTTACTTCGGGTGAAAAGATTTTCTTCCTTAACTGTGCTAATGGTCAACTCTATGTTGGTACCAGGAATCTTACAACTCATAAGGAAATGGTTCCTTGTGTCCCAAATTCGTTATTAAGGTCAGTCCATGTTTCTCAAGGTGGTGAACAACAAGATGCTATGCTATTATGGCTAGAAGAACATGGTCGTCGCCTAGAAACTGGTTTTATTAAACTACGAGAGGAAAAGAAATTCAGAAGCATCTGTCAGTTCCCAGAACAAGCTCCTCTTTGTTCTACTGCAGTTACTAATGGTGTTCAGGTTCGTGCTTCGGCTTTGTTTGTGCCGGAGTTCAGTGCCATTCAGCATGAATCAGAGATTTACTTTTCTTATTCGATCCGCATGTCTCTTTTGCCCGAGGGTTGTATAGTCAATGGAATGTCGTTTGGCACTTGCCAACTATATTGGAGGCGTTGGCTCATCCGTGCTAATGATGATGTTGTATCTGATGTCAATGGGGAAGCAGTAATAGGGAAGTTTCCCCTTCTACGGCCAGGGGAGAAAGAATTTGTATATCAGAGTTGCACACCTTTACCACTTTCTTCAGGCTCTGTTGAAGGTTCTTTCACATTTGTACCTGGCAGGTACGTTCTAGATAACTCGATACTGCTTTAA

Network for GWHGAAZE010216

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	11	47	0.00024
PF04379.15	DUF525	324	414	2.50E-22

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	105.427
	SRR3591706	second leaf	41.703
	SRR3591707	mature leaf	37.175
	SRR3591708	Shoot apex	78.445
	SRR3591709	Stem	82.983
	SRR3591710	White floral bud	61.830
	SRR3591711	White flower	79.445
	SRR3591712	Green floral bud	81.933
	SRR3591713	Yellow flower	54.814
SRP173429	SRR8316895	Juvenile bud stage	47.521
	SRR8316896	Juvenile bud stage	65.489
	SRR8316897	Juvenile bud stage	44.055
	SRR8316894	Third green stage	28.566
	SRR8316900	Third green stage	89.125
	SRR8316901	Third green stage	77.681
	SRR8316898	Complete white stage	26.979
	SRR8316899	Complete white stage	102.604
	SRR8316903	Complete white stage	39.976
	SRR8316902	Silver flowering stage	22.265
	SRR8316904	Silver flowering stage	28.495
	SRR8316905	Silver flowering stage	13.186
	SRR8316906	Gold flowering stage	53.626
	SRR8316907	Gold flowering stage	54.663
	SRR8316908	Gold flowering stage	63.441
SRP132670	SRR6706286	Control	35.602
	SRR6706287	Light intensity 50%	35.629
	SRR6706288	Light intensity 20%	42.117
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.403
	CNS0095593	Slightly white alabastrum(diploid) 2	44.251
	CNS0095594	Slightly white alabastrum(diploid) 3	44.684
	CNS0095595	Whole white alabastrum(diploid) 2	40.636
	CNS0095596	Whole white alabastrum(diploid) 3	45.111
	CNS0095597	Whole white alabastrum(diploid) 4	38.882
	CNS0095598	Silvery flower (diploied) 1	39.215
	CNS0095599	Silvery flower (diploied) 2	34.951
	CNS0095600	Silvery flower (diploied) 3	58.400
	CNS0095601	Golden flower (diploid) 1	31.555
	CNS0095602	Golden flower (diploid) 2	54.205
	CNS0095603	Golden flower (diploid) 3	53.408
	CNS0095604	Slightly white alabastrum(tetraploid) 1	82.199
	CNS0095605	Slightly white alabastrum(tetraploid) 2	74.603
	CNS0095606	Slightly white alabastrum(tetraploid) 3	110.248
	CNS0095607	Whole white alabastrum(tetraploid) 1	61.134
	CNS0095608	Whole white alabastrum(tetraploid) 2	49.256
	CNS0095609	Whole white alabastrum(tetraploid) 3	80.145
	CNS0095610	Silvery flower (tetraploid) 1	63.781
	CNS0095611	Silvery flower (tetraploid) 2	77.632
	CNS0095612	Silvery flower (tetraploid) 3	59.252
	CNS0095613	Golden flower (tetraploid) 1	26.275
	CNS0095614	Golden flower (tetraploid) 2	44.798
	CNS0095615	Golden flower (tetraploid) 3	43.310
CRA001975	CRR073297	Stem 1	51.627
	CRR073298	Stem 2	47.416
	CRR073299	Stem 3	45.942
	CRR073300	Leaf 1	50.426
	CRR073301	Leaf 2	48.565
	CRR073302	Leaf 3	48.114
	CRR073303	Juvenile bud 1	61.568
	CRR073304	Juvenile bud 2	41.739
	CRR073305	Juvenile bud 3	69.014
	CRR073306	Third green 1	18.474
	CRR073307	Third green 2	17.215
	CRR073308	Third green 3	16.542
	CRR073309	Second white 1	34.308
	CRR073310	Second white 2	21.054
	CRR073311	Second white 3	19.124
	CRR073312	Silver flowering 1	14.502
	CRR073313	Silver flowering 2	21.306
	CRR073314	Silver flowering 3	13.961
	CRR073315	Gold flowering 1	22.516
	CRR073316	Gold flowering 2	24.519
	CRR073317	Gold flowering 3	29.765
	CRR073318	Tawny withering 1	46.330
	CRR073319	Tawny withering 2	31.733
	CRR073320	Tawny withering 3	47.989