Detail information of GWHGAAZE010230


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97660.10unnamed protein product [Coffea canephora]
Swissprottr|Q9M1B4|SSL13_ARATH0Protein STRICTOSIDINE SYNTHASE-LIKE 13 {ECO:0000303|PubMed:10777701} (Precursor)
trEMBLtr|A0A068TMU8|A0A068TMU8_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97660.1}
TAIR10AT3G59530.22E-147Calcium-dependent phosphotriesterase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene817188820024+
GWHAAZE00000003mRNA817188820024+
GWHAAZE00000003exon817188817558+
GWHAAZE00000003exon817846817862+
GWHAAZE00000003exon818166818445+
GWHAAZE00000003exon819118819285+
GWHAAZE00000003exon819419820024+
GWHAAZE00000003CDS817188817558+
GWHAAZE00000003CDS817846817862+
GWHAAZE00000003CDS818166818445+
GWHAAZE00000003CDS819118819285+
GWHAAZE00000003CDS819419819818+
GWHAAZE00000003three_prime_UTR819819820024+
Transcript Sequence

Network for GWHGAAZE010230

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0121


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03088.17Str_synth2012883.20E-29
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0009058biological_processbiosynthetic process
GO:0016844molecular_functionstrictosidine synthase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE010230.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30510152025303540455055Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.038
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.025
SRR3591709Stem0.082
SRR3591710White floral bud5.592
SRR3591711White flower4.215
SRR3591712Green floral bud29.479
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 31.146
SRR8316896Juvenile bud stage 42.894
SRR8316897Juvenile bud stage 24.392
SRR8316894Third green stage 9.999
SRR8316900Third green stage 18.356
SRR8316901Third green stage 20.341
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 2.012
SRR8316903Complete white stage 0.343
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.024
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control22.858
SRR6706287Light intensity 50%22.015
SRR6706288Light intensity 20%23.060
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.708
CNS0095593Slightly white alabastrum(diploid) 27.026
CNS0095594Slightly white alabastrum(diploid) 343.090
CNS0095595Whole white alabastrum(diploid) 22.982
CNS0095596Whole white alabastrum(diploid) 37.464
CNS0095597Whole white alabastrum(diploid) 47.526
CNS0095598Silvery flower (diploied) 10.916
CNS0095599Silvery flower (diploied) 20.196
CNS0095600Silvery flower (diploied) 30.289
CNS0095601Golden flower (diploid) 10.072
CNS0095602Golden flower (diploid) 20.451
CNS0095603Golden flower (diploid) 30.535
CNS0095604Slightly white alabastrum(tetraploid) 16.808
CNS0095605Slightly white alabastrum(tetraploid) 29.938
CNS0095606Slightly white alabastrum(tetraploid) 30.034
CNS0095607Whole white alabastrum(tetraploid) 11.897
CNS0095608Whole white alabastrum(tetraploid) 21.718
CNS0095609Whole white alabastrum(tetraploid) 347.428
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.055
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.021
CNS0095614Golden flower (tetraploid) 20.018
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 126.123
CRR073298Stem 225.491
CRR073299Stem 349.395
CRR073300Leaf 12.658
CRR073301Leaf 22.877
CRR073302Leaf 311.360
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.121
CRR073305Juvenile bud 30.029
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.055
CRR073310Second white 20.054
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.016
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.038
CRR073319Tawny withering 20.163
CRR073320Tawny withering 30.217