Gene detail

Detail information of GWHGAAZE010230

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97660.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M1B4\|SSL13_ARATH	0	Protein STRICTOSIDINE SYNTHASE-LIKE 13 {ECO:0000303\|PubMed:10777701} (Precursor)
trEMBL	tr\|A0A068TMU8\|A0A068TMU8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97660.1}
TAIR10	AT3G59530.2	2E-147	Calcium-dependent phosphotriesterase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	817188	820024	+
GWHAAZE00000003	mRNA	817188	820024	+
GWHAAZE00000003	exon	817188	817558	+
GWHAAZE00000003	exon	817846	817862	+
GWHAAZE00000003	exon	818166	818445	+
GWHAAZE00000003	exon	819118	819285	+
GWHAAZE00000003	exon	819419	820024	+
GWHAAZE00000003	CDS	817188	817558	+
GWHAAZE00000003	CDS	817846	817862	+
GWHAAZE00000003	CDS	818166	818445	+
GWHAAZE00000003	CDS	819118	819285	+
GWHAAZE00000003	CDS	819419	819818	+
GWHAAZE00000003	three_prime_UTR	819819	820024	+

Transcript Sequence
>GWHTAAZE010242 ATGGAAAAGAAGCGACTAGTTTTGAAAGATGAACCTATACTACAACACCCATTTCTCCTTCTTTTAGTTATAGTTTTAGGGTTTCTCATAATGGATCCATTTCAATGGAACCCACTTGGTGGCCATGACTTTAGGCCCGTACGCAATGACATTGCGTCGTACAAGGAGGTGATGAAGAGGTGGCCAAGAGACAATGAAAGCCGCTTAGGGCTTGGAAACTTGGAGTTTGTTGATCAAGTTTATGGCCCTGAGTCTTTAGAGTTTGATAGTTTTGGGAGAGGGCCGTACACTGGGTTAGCCGATGGACGCATTGTAAGATGGATGGGCGAAAATGGAAAGTGGGAGACATTCGCACTTGTCACACCAAATTGGACTCTTTGTTCCAATGGTCAGAAAAGATGTGCGCGAAAGGAAAAGATTCAACAACACACAAGCAGTGGAAGAATGAACCAAGTGTGGCCCTCTCGGCTTGCGCTTCAACAGAGATACAGGAGATTTGTACATAGCAGATGCTTATTACGCCTACTGGTGGTAGGGCCGGAAGGAGGTATCGCTATGCCCTTGTCGACACACGTGGAAGGGAAGCCTATACTCTTTGCAAATGATCTTGACATTCACAATAATGGTTCAATCTTCTTCACTGATACTAGCACCAAGTACAACAGAGTGAACCATTTCTTTATAATGTTGGAAGGAGAAGCCACAGGTAGGTTGCTTAGGTATGACCCTCCAACACAAACAACTCATCTTGTATTGGATGGCTTGGCTTTCCCAAATGGTGTCCAATTATCTCAAGACCAGTCCTTTATTTTCTACACCGAGACCACCAATTGCAGGCTTATGAAGTACTGGATAGAAGGTCCTGAAACAGGGACGGTGGAACTGGTTGCAGATCTACCAGGATTTCCAGACAACATAAGATTGAACGAGAAAGGCGAATACTGGGTAGCGATAGATTGTTGCAGAACTCGAGCGCAAGAGGTTCTCATTCACTACCCGTGGGTAAGAAAGATTTATTTTCGGCTACCGCTTCCAATACGCTACTTGGCAAGAATAATGGGCATGAGAATGTACTCGGTCATTTCACTTTTCAATGAGGATGGAGAGATTTTGAACGTTCTTGAAGACAAGAAGGGTGTAGTGATGAAGCTAGTAAGTGAAGTGAGAGAGGTAAAGGGGAAGTTGTGGATTGGTACCGTTGCTCATAACCACATCGCAACACTACCTTATCCTTGAAAATGTTATTTTTAATGTGAAATCTTGTTGGTGTGACATTATATTTAGATTTTGTCCCTATGATTAAATATGTTCCTAGGATTATATATTGGTCATATATATATAGCTGGTATTTGAGAGCTTCTTTGATTTGATTATGTGATCATGTTCAAAAACCTACTTTAAAAACTTGATGGGAACAAAGAAAACAAATTATGAACCACATA

Network for GWHGAAZE010230

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0121

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03088.17	Str_synth	201	288	3.20E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0016844	molecular_function	strictosidine synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.038
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.025
	SRR3591709	Stem	0.082
	SRR3591710	White floral bud	5.592
	SRR3591711	White flower	4.215
	SRR3591712	Green floral bud	29.479
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	31.146
	SRR8316896	Juvenile bud stage	42.894
	SRR8316897	Juvenile bud stage	24.392
	SRR8316894	Third green stage	9.999
	SRR8316900	Third green stage	18.356
	SRR8316901	Third green stage	20.341
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.012
	SRR8316903	Complete white stage	0.343
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.024
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	22.858
	SRR6706287	Light intensity 50%	22.015
	SRR6706288	Light intensity 20%	23.060
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.708
	CNS0095593	Slightly white alabastrum(diploid) 2	7.026
	CNS0095594	Slightly white alabastrum(diploid) 3	43.090
	CNS0095595	Whole white alabastrum(diploid) 2	2.982
	CNS0095596	Whole white alabastrum(diploid) 3	7.464
	CNS0095597	Whole white alabastrum(diploid) 4	7.526
	CNS0095598	Silvery flower (diploied) 1	0.916
	CNS0095599	Silvery flower (diploied) 2	0.196
	CNS0095600	Silvery flower (diploied) 3	0.289
	CNS0095601	Golden flower (diploid) 1	0.072
	CNS0095602	Golden flower (diploid) 2	0.451
	CNS0095603	Golden flower (diploid) 3	0.535
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.808
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.938
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.034
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.897
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.718
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.428
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.055
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.021
	CNS0095614	Golden flower (tetraploid) 2	0.018
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	26.123
	CRR073298	Stem 2	25.491
	CRR073299	Stem 3	49.395
	CRR073300	Leaf 1	2.658
	CRR073301	Leaf 2	2.877
	CRR073302	Leaf 3	11.360
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.121
	CRR073305	Juvenile bud 3	0.029
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.055
	CRR073310	Second white 2	0.054
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.016
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.038
	CRR073319	Tawny withering 2	0.163
	CRR073320	Tawny withering 3	0.217