Detail information of GWHGAAZE010232


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010054007.14.97E-141PREDICTED: uncharacterized zinc finger CCHC domain-containing protein At4g19190 [Eucalyptus grandis]
Swissprottr|Q8VZ67|Y4919_ARATH3E-130Uncharacterized zinc finger CCHC domain-containing protein At4g19190
trEMBLtr|A0A059CJP5|A0A059CJP5_EUCGR8E-141Uncharacterized protein {ECO:0000313|EMBL:KCW78391.1}
TAIR10AT4G19190.11E-101zinc knuckle (CCHC-type) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene826814832137-
GWHAAZE00000003mRNA826814832137-
GWHAAZE00000003exon831901832137-
GWHAAZE00000003exon831734831796-
GWHAAZE00000003exon831249831403-
GWHAAZE00000003exon831001831090-
GWHAAZE00000003exon826814827051-
GWHAAZE00000003CDS831901832137-
GWHAAZE00000003CDS831734831796-
GWHAAZE00000003CDS831249831403-
GWHAAZE00000003CDS831001831090-
GWHAAZE00000003CDS826814827051-
Transcript Sequence

Network for GWHGAAZE010232

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10197.10Cir_N48834.90E-11
PF15288.7zf-CCHC_62012224.50E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06066CIR Notch signaling pathway map04330

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.561
SRR3591706second leaf4.210
SRR3591707mature leaf5.123
SRR3591708Shoot apex7.131
SRR3591709Stem6.160
SRR3591710White floral bud14.674
SRR3591711White flower12.255
SRR3591712Green floral bud9.877
SRR3591713Yellow flower12.655
SRP173429 SRR8316895Juvenile bud stage 6.088
SRR8316896Juvenile bud stage 8.503
SRR8316897Juvenile bud stage 3.408
SRR8316894Third green stage 4.731
SRR8316900Third green stage 11.079
SRR8316901Third green stage 9.056
SRR8316898Complete white stage 5.461
SRR8316899Complete white stage 10.433
SRR8316903Complete white stage 6.536
SRR8316902Silver flowering stage5.169
SRR8316904Silver flowering stage4.708
SRR8316905Silver flowering stage1.765
SRR8316906Gold flowering stage 11.672
SRR8316907Gold flowering stage 9.999
SRR8316908Gold flowering stage 11.007
SRP132670SRR6706286Control15.685
SRR6706287Light intensity 50%12.677
SRR6706288Light intensity 20%11.594
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.529
CNS0095593Slightly white alabastrum(diploid) 24.151
CNS0095594Slightly white alabastrum(diploid) 37.410
CNS0095595Whole white alabastrum(diploid) 25.827
CNS0095596Whole white alabastrum(diploid) 36.763
CNS0095597Whole white alabastrum(diploid) 46.302
CNS0095598Silvery flower (diploied) 14.876
CNS0095599Silvery flower (diploied) 25.881
CNS0095600Silvery flower (diploied) 39.400
CNS0095601Golden flower (diploid) 16.853
CNS0095602Golden flower (diploid) 211.569
CNS0095603Golden flower (diploid) 310.860
CNS0095604Slightly white alabastrum(tetraploid) 16.915
CNS0095605Slightly white alabastrum(tetraploid) 25.643
CNS0095606Slightly white alabastrum(tetraploid) 310.827
CNS0095607Whole white alabastrum(tetraploid) 12.484
CNS0095608Whole white alabastrum(tetraploid) 24.927
CNS0095609Whole white alabastrum(tetraploid) 37.224
CNS0095610Silvery flower (tetraploid) 110.004
CNS0095611Silvery flower (tetraploid) 29.077
CNS0095612Silvery flower (tetraploid) 37.168
CNS0095613Golden flower (tetraploid) 16.178
CNS0095614Golden flower (tetraploid) 28.210
CNS0095615Golden flower (tetraploid) 36.665
CRA001975CRR073297Stem 120.462
CRR073298Stem 215.378
CRR073299Stem 317.512
CRR073300Leaf 116.957
CRR073301Leaf 216.669
CRR073302Leaf 319.441
CRR073303Juvenile bud 114.786
CRR073304Juvenile bud 217.760
CRR073305Juvenile bud 316.606
CRR073306Third green 18.376
CRR073307Third green 25.966
CRR073308Third green 36.472
CRR073309Second white 16.780
CRR073310Second white 26.578
CRR073311Second white 310.344
CRR073312Silver flowering 17.053
CRR073313Silver flowering 28.067
CRR073314Silver flowering 38.005
CRR073315Gold flowering 18.996
CRR073316Gold flowering 215.394
CRR073317Gold flowering 310.758
CRR073318Tawny withering 111.220
CRR073319Tawny withering 28.556
CRR073320Tawny withering 310.942