Gene detail

Detail information of GWHGAAZE010258

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHJ08575.1	1.1112E-90	DREB6-like protein [Cichorium intybus]
Swissprot	tr\|Q8H1E4\|RAP24_ARATH	4E-66	Ethylene-responsive transcription factor RAP2-4
trEMBL	tr\|A0A023JIR1\|A0A023JIR1_CICIN	4E-91	DREB6-like protein {ECO:0000313\|EMBL:AHJ08575.1}
TAIR10	AT1G64530.1	2E-43	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	2024205	2033005	+
GWHAAZE00000003	mRNA	2024205	2033005	+
GWHAAZE00000003	exon	2024205	2024961	+
GWHAAZE00000003	exon	2026235	2026345	+
GWHAAZE00000003	exon	2026558	2027039	+
GWHAAZE00000003	exon	2027796	2028879	+
GWHAAZE00000003	exon	2029054	2029470	+
GWHAAZE00000003	exon	2032917	2033005	+
GWHAAZE00000003	CDS	2024205	2024961	+
GWHAAZE00000003	CDS	2026235	2026345	+
GWHAAZE00000003	CDS	2026558	2027039	+
GWHAAZE00000003	CDS	2027796	2028879	+
GWHAAZE00000003	CDS	2029054	2029470	+
GWHAAZE00000003	CDS	2032917	2033005	+

Transcript Sequence
>GWHTAAZE010270 ATGGTCCCTCCACCTCGTCAACCCATCTTTTCCCAAGGGTTCTCGACCCAAGACCAGTTTGGTCCAGACCAACCCGGATTCATCGGACTCAACCAACTCGCCCCTTCTCAGATTCACCAGATTCGAGGCCAAATTGACCTCCAACAAAACCAATCCTGCCCTCAGAACCAACAGACCCTCAATTTCCTCGGCCCAAAGCCCGTACCCATGAAGCAAGTCGGCTCATCACCCAAGCCCATCAAGCTCTACAGAGGGGTGAGACAAAGGCCCTGGGGAAAATGGGTCGCTGAGATCTGGTTACCCAAGAACTGTACCCGACTATGGCTCGGCACATTCGACACTGCCGAAGAGGCGGCGCTGGCTTATGACAAAGCCGCCTACATGCTTAGAGGAGATTCGGCTCGGCTCAATTTCCCAAACCTGAGGCTCGAGGGGTCCCACATAGGCGGAGAATTTGGCGGGTACAAGCCGCTTCGCTCGGCTGTGGACGCTAAACTCAATGCTATCTGTCAGAACTTGGCGGAGGGTAAGAGTATTGATGTTAAAAAGCCGTCCTCGAAGAGATCCGTGGCTGCAGCGGTGGCGGAGGAGGAGTGTGTGAGGGTGGAAGGGAGCTCGGAGAGTGACGGGTCTCGCGGGTCTTCGCCGTTGTCGGATCTGACGTTCCCGGAGTTCAGGGAGGAGGAGCCGGCTTGCGAAGTGTTTTCATCGGCTGAGAATTTCATTGTGAAGTATCCATCTGTTGAGATTGATTGGGACTATCCATTTGACAGTTTCCGTAAAGATATGGCTTCTTTCAATATGTCATGCATGAAGGTGAGTGATAGAAACAAAATGTGGATTTCCTGGGGCCAAGAAGAAGGACAAGGTCCAGTTACTGAAACACTTACCAACAACAGTTGGGAGAATGTTCAAGAGTACTTAAAATCTGTACTTTCAAATGCTGAATATGCTTATATGGCAAATGTTGGTCTAATTCAATTTTGGGCTCCTACTACTACTAGTAGTACGATTGGGGGGCACTGTGTGCTTAAAACATCAAATCAACCTTTTGCTTTTTACAGAATTGAGAAAGAACTTTTCGAGTACAGGAAGTATTGTACCAACCTTGAATTTAATATCTCCCAAGACAAAGGAAAAAAATATGAAGATGACTTTGGTAGTATAATTGGGCAAGTCTTCAGGGATAAAAAAGCAGATTTCACTAAACACGATCTGCAGAGGTCTTTGTTACTACCCCTCTTCAAACCTTCCAGCCAGTGCTGTTCCGGTATACTTGAGCTCGTATGTATTTCCAAGCGTATATTCTATTTTGATGATCCATGCAGAGCAGCCGAAGCTATATTTAAGGAAAGTACAGAAATAGAAGAGATCAATAAGGCGTTGCAAGGGGTGTGTACAACACACCAGTTACCCCTTGCTCAAATCTGGATTCCATGTTGTACTAGAACTGCCATGGCCTATGTTGATAGCCCAGGCAAACGCTGCCATTCCCCTTATTTAAGCTGCAGCAGTAAATTTTCATCATCAATATATCAGAATGGTAATAAATATTTCTATAATGGCATGGAAGGCTTCAACCGTATGTGCAACTGTTATGATTTTAGGTTGGGTCAGGGTATTCTTGGTAAGCCTCTTTTATACCACAATCCTTGCTTCTGCAGGGATGTAACCCAACTGCCCCGGGTTGTGTACCCCTTATCCGATTATGCAGACCATTTTGGGTTAACTGGCTGTTGTGCAATTTGGTTGCACATTACTCGCACTAAGAATCACAATTATGTGCTAGAGTTTTTCCTCCCCCCTTGGAACACAATCTCTGGAGATCTGCAGAGATATTTGGAGTTGCTGTTGACAACAGTGAAGAAGCAACTTCCAGGTTTTAAAATTAGTTCAGTGGGAGAGGAATCACGTGTGGAAGTATGTGAAATTTCTGTGAATGACGATGAACCTGGTTCTATTATAATATCCCAAACTTTTAGTGTTAAACCCGTACCCGAATCCTTTGTAAATGACAAGGAAATGCTGCAGAACGAAGTGGTAGGTGAAACTGTTATAGACAATGGATCAAATATTCTTGGTTTGGAAGAAAACGGCATGGCTGTTTGTCATTCAGAGAAAACAGCTGGAGAGGAATTGTTTGTTGAAGCTGCTATGGATGATGAAATAACTAGAAGGCTTCCACCCATGCCTGAATCCTTGCGAAATGAAAATGAAGTGGTGCTATCAGTTGACGAGCCAACCATGGAAGAAGCGGTTAGAATGAATGAATTGAATGTTGGGATTGATGAAGCTGTTACATCTTTAGAGAGAATATTCAGCAGAGTAGAGGCATCGGAGAGAGACTATAGAACAACTGAAATTACATTAACTTACGAGGATCTCAGAAAACATTTTGGAAAGAAGCTTGATGATGCTGCGAAGATACTTGAGGTTAGTCGATCTACAATGAAGCGTGCGTGCAGACGTCATGATATCAAAAAGTGGCCAGCTCCGAAGAGAAAGAAGGTTAATGTCCTTCGTGTTTGCAGTGGCAATAAAGGAATTGAACGAACTTACAAGGGAGACTCCTCGTGTTCTGACCCACTTCCTACGCCCGCCATAGCAGGTATTTCTCACAAAACAACTAATTCTAGAGAAGAACAAGATGTGGGAACCGTCACCGTAAAGGCAACACATGGAGGTCATACTATTCGGTTTGGCCTCCCATTTTTATCAAGAAAGACGGATTTAGTGAAGCAGGTGATAAAGAGGCTACCATTGAATGAAGGATATTTTAATATCAAGTATCAGGATGAAGAGAATGACTGGATTTTAATTGCTTGTGATGAGGACCTGGAGCAGTGTATTGATCGAGCTCTTCTCCAGAGCTCTTCTTCTCCACCTCGCAGCCCTACTTCTCCACCTCGCAAGTCCTCTCCAAATCTCAAATTCCTCTGA

Network for GWHGAAZE010258

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	83	131	7.20E-15
PF02042.16	RWP-RK	789	837	1.80E-15
PF00564.25	PB1	886	953	1.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.651
	SRR3591706	second leaf	5.721
	SRR3591707	mature leaf	8.770
	SRR3591708	Shoot apex	6.731
	SRR3591709	Stem	7.987
	SRR3591710	White floral bud	3.487
	SRR3591711	White flower	5.878
	SRR3591712	Green floral bud	3.065
	SRR3591713	Yellow flower	4.668
SRP173429	SRR8316895	Juvenile bud stage	5.420
	SRR8316896	Juvenile bud stage	7.203
	SRR8316897	Juvenile bud stage	3.449
	SRR8316894	Third green stage	3.457
	SRR8316900	Third green stage	5.767
	SRR8316901	Third green stage	5.665
	SRR8316898	Complete white stage	1.205
	SRR8316899	Complete white stage	7.197
	SRR8316903	Complete white stage	3.985
	SRR8316902	Silver flowering stage	2.102
	SRR8316904	Silver flowering stage	3.175
	SRR8316905	Silver flowering stage	1.897
	SRR8316906	Gold flowering stage	8.425
	SRR8316907	Gold flowering stage	4.731
	SRR8316908	Gold flowering stage	6.320
SRP132670	SRR6706286	Control	6.519
	SRR6706287	Light intensity 50%	6.500
	SRR6706288	Light intensity 20%	5.490
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.200
	CNS0095593	Slightly white alabastrum(diploid) 2	2.299
	CNS0095594	Slightly white alabastrum(diploid) 3	2.537
	CNS0095595	Whole white alabastrum(diploid) 2	2.336
	CNS0095596	Whole white alabastrum(diploid) 3	1.385
	CNS0095597	Whole white alabastrum(diploid) 4	2.063
	CNS0095598	Silvery flower (diploied) 1	8.212
	CNS0095599	Silvery flower (diploied) 2	6.083
	CNS0095600	Silvery flower (diploied) 3	5.745
	CNS0095601	Golden flower (diploid) 1	6.236
	CNS0095602	Golden flower (diploid) 2	10.660
	CNS0095603	Golden flower (diploid) 3	11.157
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.890
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.809
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.818
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.247
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.285
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.334
	CNS0095610	Silvery flower (tetraploid) 1	6.766
	CNS0095611	Silvery flower (tetraploid) 2	5.903
	CNS0095612	Silvery flower (tetraploid) 3	5.867
	CNS0095613	Golden flower (tetraploid) 1	4.629
	CNS0095614	Golden flower (tetraploid) 2	6.201
	CNS0095615	Golden flower (tetraploid) 3	5.559
CRA001975	CRR073297	Stem 1	8.299
	CRR073298	Stem 2	7.157
	CRR073299	Stem 3	2.561
	CRR073300	Leaf 1	6.170
	CRR073301	Leaf 2	5.719
	CRR073302	Leaf 3	1.904
	CRR073303	Juvenile bud 1	1.246
	CRR073304	Juvenile bud 2	0.450
	CRR073305	Juvenile bud 3	1.634
	CRR073306	Third green 1	0.942
	CRR073307	Third green 2	0.468
	CRR073308	Third green 3	0.849
	CRR073309	Second white 1	0.778
	CRR073310	Second white 2	1.284
	CRR073311	Second white 3	1.088
	CRR073312	Silver flowering 1	1.445
	CRR073313	Silver flowering 2	1.496
	CRR073314	Silver flowering 3	0.985
	CRR073315	Gold flowering 1	1.308
	CRR073316	Gold flowering 2	3.679
	CRR073317	Gold flowering 3	1.260
	CRR073318	Tawny withering 1	3.328
	CRR073319	Tawny withering 2	2.927
	CRR073320	Tawny withering 3	2.594