Gene detail

Detail information of GWHGAAZE010276

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AIE16180.1	2.1666E-142	fructokinase [Nicotiana tabacum]
Swissprot	tr\|Q9SID0\|SCRK1_ARATH	3E-139	Probable fructokinase-1
trEMBL	tr\|A0A068JCD7\|A0A068JCD7_TOBAC	8E-143	Fructokinase {ECO:0000313\|EMBL:AIE16180.1}
TAIR10	AT2G31390.1	3E-112	pfkB-like carbohydrate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	2403784	2411767	+
GWHAAZE00000003	mRNA	2403784	2411767	+
GWHAAZE00000003	exon	2403784	2403896	+
GWHAAZE00000003	exon	2403979	2404023	+
GWHAAZE00000003	exon	2404596	2404902	+
GWHAAZE00000003	exon	2408233	2408565	+
GWHAAZE00000003	exon	2411543	2411767	+
GWHAAZE00000003	CDS	2403784	2403896	+
GWHAAZE00000003	CDS	2403979	2404023	+
GWHAAZE00000003	CDS	2404596	2404902	+
GWHAAZE00000003	CDS	2408233	2408565	+
GWHAAZE00000003	CDS	2411543	2411767	+

Transcript Sequence
>GWHTAAZE010288 ATGGCCACCATTGGAGAGTTAAGCCAAGAAGAAGAGGGTGCTCTAATTGAAGCAGAGGTTAATTCCACAAGGCCTAAGCATATTGCTCTCTTCGTTGAGCCTTCTCTTTTTGCTCTCAATGGATATATGTCAAATGGAGGGAAATGGGAGAAATTGAGGCCCCGGGGTTCCTCAAGGCTCCCGGCGGGGCTCCGGCGAACGTGGCGATCGCAGTCGCCAGGCTCGGCGGCGAGGCCGCGTTCGTCGGCAAAGCTCGGCGACGACGAGTTCGGACACATGCTCGCCGGGATTCTGAAGAAGAACGGAGTCTCCTGCGACGGGATTAACTTCGACACGGGCGCTAGAACTGCTCTCGCCTTCGTGACTTTGAAAGCCGACGGCGATCGGGAATTTATGTTTTACAGGAATCCTAGTGCTGATATGCTTTTGACTCCCGATGAACTCAATCTCGAGCTTATCAGATCTGCTAAGGTATTCCACTACGGGTCGATAAGCTTGATCGTGGAGCCATGTAGATCGGCTCATTTGAAGGCAATGGAGGTGGCTAGGGATGCTGGTGCACTGCTCTCATATGACCCGAACCTTCGGATACCGTTGTGGCCTTCGGAAAAGGAGGCTCGGGAACAGATAATGAGCATATGGGAGAAGGCAGATGTGATAAAAGTGAGTGATGTGGAGCTTGAATTCCTCACTGAGAGTGATAAGATTGATGATGAATCTGCAATGTCACTTTGGCATCCTAATTTGAAGCTTCTTTTGGTCACCCTCGGTGAAAAGGGATGCAGATACTACACTAAGAGTTACCATGGATCGATAGACGCATTTCATGTCAAGGCTGTGGACACAACGGGTGCGGGCGATTCGTTTGTTGGTGCCCTATTATTGAAGATAGTTGAAGACCACTCTGTACTCGAGGTACGTTTCTATTCCTCTTGTCAAACTAGTAACAATCGCGATTTTTTTCCCAAATGTTATATTATACAAGGGCATTCTGTGTTTGAGGTGGGTGGAACTCAAATATGA

Network for GWHGAAZE010276

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00294.25	PfkB	83	303	5.90E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00847	E2.7.1.4, scrK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0016773	molecular_function	phosphotransferase activity, alcohol group as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	369.505
	SRR3591706	second leaf	119.392
	SRR3591707	mature leaf	51.561
	SRR3591708	Shoot apex	294.082
	SRR3591709	Stem	450.384
	SRR3591710	White floral bud	68.942
	SRR3591711	White flower	143.506
	SRR3591712	Green floral bud	142.692
	SRR3591713	Yellow flower	264.155
SRP173429	SRR8316895	Juvenile bud stage	114.101
	SRR8316896	Juvenile bud stage	131.463
	SRR8316897	Juvenile bud stage	55.180
	SRR8316894	Third green stage	53.510
	SRR8316900	Third green stage	228.108
	SRR8316901	Third green stage	193.014
	SRR8316898	Complete white stage	72.444
	SRR8316899	Complete white stage	240.839
	SRR8316903	Complete white stage	85.212
	SRR8316902	Silver flowering stage	95.145
	SRR8316904	Silver flowering stage	109.118
	SRR8316905	Silver flowering stage	66.744
	SRR8316906	Gold flowering stage	235.471
	SRR8316907	Gold flowering stage	231.125
	SRR8316908	Gold flowering stage	225.630
SRP132670	SRR6706286	Control	220.371
	SRR6706287	Light intensity 50%	229.000
	SRR6706288	Light intensity 20%	270.995
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	147.545
	CNS0095593	Slightly white alabastrum(diploid) 2	160.806
	CNS0095594	Slightly white alabastrum(diploid) 3	121.184
	CNS0095595	Whole white alabastrum(diploid) 2	127.920
	CNS0095596	Whole white alabastrum(diploid) 3	129.461
	CNS0095597	Whole white alabastrum(diploid) 4	104.270
	CNS0095598	Silvery flower (diploied) 1	170.552
	CNS0095599	Silvery flower (diploied) 2	135.983
	CNS0095600	Silvery flower (diploied) 3	175.452
	CNS0095601	Golden flower (diploid) 1	149.823
	CNS0095602	Golden flower (diploid) 2	221.626
	CNS0095603	Golden flower (diploid) 3	212.462
	CNS0095604	Slightly white alabastrum(tetraploid) 1	154.857
	CNS0095605	Slightly white alabastrum(tetraploid) 2	119.632
	CNS0095606	Slightly white alabastrum(tetraploid) 3	313.508
	CNS0095607	Whole white alabastrum(tetraploid) 1	69.498
	CNS0095608	Whole white alabastrum(tetraploid) 2	59.254
	CNS0095609	Whole white alabastrum(tetraploid) 3	192.461
	CNS0095610	Silvery flower (tetraploid) 1	132.182
	CNS0095611	Silvery flower (tetraploid) 2	112.930
	CNS0095612	Silvery flower (tetraploid) 3	87.917
	CNS0095613	Golden flower (tetraploid) 1	102.005
	CNS0095614	Golden flower (tetraploid) 2	164.734
	CNS0095615	Golden flower (tetraploid) 3	75.041
CRA001975	CRR073297	Stem 1	240.331
	CRR073298	Stem 2	250.498
	CRR073299	Stem 3	331.768
	CRR073300	Leaf 1	256.804
	CRR073301	Leaf 2	276.717
	CRR073302	Leaf 3	420.115
	CRR073303	Juvenile bud 1	332.736
	CRR073304	Juvenile bud 2	308.605
	CRR073305	Juvenile bud 3	325.029
	CRR073306	Third green 1	387.871
	CRR073307	Third green 2	354.621
	CRR073308	Third green 3	293.422
	CRR073309	Second white 1	441.507
	CRR073310	Second white 2	255.606
	CRR073311	Second white 3	239.698
	CRR073312	Silver flowering 1	340.839
	CRR073313	Silver flowering 2	391.253
	CRR073314	Silver flowering 3	362.042
	CRR073315	Gold flowering 1	79.826
	CRR073316	Gold flowering 2	79.012
	CRR073317	Gold flowering 3	116.490
	CRR073318	Tawny withering 1	658.223
	CRR073319	Tawny withering 2	448.434
	CRR073320	Tawny withering 3	823.067