Gene detail

Detail information of GWHGAAZE010284

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97660.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M1B4\|SSL13_ARATH	0	Protein STRICTOSIDINE SYNTHASE-LIKE 13 {ECO:0000303\|PubMed:10777701} (Precursor)
trEMBL	tr\|A0A068TMU8\|A0A068TMU8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97660.1}
TAIR10	AT3G59530.2	2E-171	Calcium-dependent phosphotriesterase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	2798155	2801006	-
GWHAAZE00000003	mRNA	2798155	2801006	-
GWHAAZE00000003	exon	2800636	2801006	-
GWHAAZE00000003	exon	2799734	2800018	-
GWHAAZE00000003	exon	2798897	2799064	-
GWHAAZE00000003	exon	2798155	2798760	-
GWHAAZE00000003	CDS	2800636	2801006	-
GWHAAZE00000003	CDS	2799734	2800018	-
GWHAAZE00000003	CDS	2798897	2799064	-
GWHAAZE00000003	CDS	2798361	2798760	-
GWHAAZE00000003	three_prime_UTR	2798155	2798360	-

Transcript Sequence
>GWHTAAZE010296 ATGGAAAAGAAGAGACTAGTTTTGAAAGATGAACCTATACTACAACACCCATTTCTCCTTCTTTTAGTTATAGTTTTAGGGTTTCTCATAATGGATCCATTTCAGTGGAACCCGCTTGGTAGCCATGACTTTAGGCCCGTACGCAATGACATTGCGTCATACAAGGAGGTGATGAAGAGGTGGCCAAGAGACAATGAAAGCCGCTTAGGGCTTGGAAACTTGGAGTTTGTTGATCAAGTTTATGGCCCTGAGTCTTTAGAGTTTGATAGTTTTGGGAGAGGGCCGTACACTGGGTTAGCCGATGGACGCATTGTAAGATGGATGGGCGAAAATGGAAAGTGGGAGACATTCGCACTTGTCACACCAAATTGGTCAGAAAAGATGTGCGCGAAAGGAAAAGATTCAACAACACACAAGCAGTGGAAGAATGAACCGAAGTGTGGCCGCCCTCTCGGCTTACGCTTCAACAGAGATACAGGAGATTTGTACATAGCAGATGCTTATTACGGCCTACTGGTGGTAGGGCCGGAAGGAGGTATCGCTATGCCCTTGTCGACACACGTGGAAGGGAAGCCTATACTCTTTGCAAATGATCTTGACATTCACAATAATGGTTCAATCTTCTTCACTGATACTAGCACCAAGTACAACAGAGTGAACCATTTCTTTATAATGTTGGAAGGAGAAGCCACAGGTAGGTTGCTTAGGTATGACCCTCCAACACAAACAACTCATCTTGTATTGGATGGCTTGGCTTTCCCAAATGGTGTCCAATTATCTCAAGACCAGTCCTTTATTTTCTACACCGAGACCACCAATTGCAGGCTTATGAAGTACTGGATAGAAGGTCCTAAAACAGGGACGGTGGAACTGGTTGCAGATCTACCAGGATTTCCAGACAACATAAGATTGAACGAGAAAGGCGAATACTGGGTAGCGATAGATTGTTGCAGAACTCGAGCGCAAGAGGTTCTCATTCACTACCCGTGGGTAAGAAAGATTTATTTTCGGCTACCGCTTCCAATACGCTACTTGGCAAGAATAATGGGCATGAGAATGTACTCGGTCATTTCACTTTTCAATGAGGATGGAGAGATTTTGAACGTTCTTGAAGACAAGAAGGGTGTAGTGATGAAGCTAGTAAGTGAAGTGAGAGAGGTAAAGGGGAAGTTGTGGATTGGTACCGTTGCTCATAACCACATCGCAACACTACCTTATCCTTGAAAATGTTATTTTTAATGTGAAATCTTGTTGGTGTGACATTATATTTAGATTTTGTCCCTATGATTAAATATGTTCCTAGGATTATATATTGGTCATATATATATAGCTGGTATTTGAGAGCTTCTTTGATTTGATTATGTGATCATGTTCAAAAACCTACTTTAAAAACTTGATGGGAACAAAGAAAACAAATTATGAACCACATA

Network for GWHGAAZE010284

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0121

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03088.17	Str_synth	197	284	3.20E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0016844	molecular_function	strictosidine synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.066
	SRR3591706	second leaf	0.161
	SRR3591707	mature leaf	0.048
	SRR3591708	Shoot apex	0.224
	SRR3591709	Stem	0.099
	SRR3591710	White floral bud	9.118
	SRR3591711	White flower	9.699
	SRR3591712	Green floral bud	50.441
	SRR3591713	Yellow flower	0.041
SRP173429	SRR8316895	Juvenile bud stage	52.573
	SRR8316896	Juvenile bud stage	67.541
	SRR8316897	Juvenile bud stage	19.897
	SRR8316894	Third green stage	15.934
	SRR8316900	Third green stage	37.167
	SRR8316901	Third green stage	33.972
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	3.096
	SRR8316903	Complete white stage	0.463
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.038
	SRR8316905	Silver flowering stage	0.024
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	53.523
	SRR6706287	Light intensity 50%	53.159
	SRR6706288	Light intensity 20%	59.195
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.796
	CNS0095593	Slightly white alabastrum(diploid) 2	12.475
	CNS0095594	Slightly white alabastrum(diploid) 3	62.041
	CNS0095595	Whole white alabastrum(diploid) 2	6.357
	CNS0095596	Whole white alabastrum(diploid) 3	12.906
	CNS0095597	Whole white alabastrum(diploid) 4	13.309
	CNS0095598	Silvery flower (diploied) 1	0.827
	CNS0095599	Silvery flower (diploied) 2	0.270
	CNS0095600	Silvery flower (diploied) 3	0.969
	CNS0095601	Golden flower (diploid) 1	0.481
	CNS0095602	Golden flower (diploid) 2	1.255
	CNS0095603	Golden flower (diploid) 3	0.963
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.162
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.069
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.717
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.751
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.910
	CNS0095609	Whole white alabastrum(tetraploid) 3	106.553
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.544
	CNS0095612	Silvery flower (tetraploid) 3	0.143
	CNS0095613	Golden flower (tetraploid) 1	0.051
	CNS0095614	Golden flower (tetraploid) 2	0.018
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	62.316
	CRR073298	Stem 2	58.292
	CRR073299	Stem 3	112.677
	CRR073300	Leaf 1	6.995
	CRR073301	Leaf 2	5.965
	CRR073302	Leaf 3	30.987
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.213
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.033
	CRR073307	Third green 2	0.036
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.092
	CRR073311	Second white 3	0.037
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.016
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.128
	CRR073320	Tawny withering 3	0.219