Gene detail

Detail information of GWHGAAZE010297

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010107269.1	1.49563E-42	Protein NLP7 [Morus notabilis]
Swissprot	tr\|Q8RWY4\|NLP6_ARATH	2E-37	Protein NLP6
trEMBL	tr\|M5WA77\|M5WA77_PRUPE	2E-46	Uncharacterized protein {ECO:0000313\|EMBL:EMJ10221.1} (Fragment)
TAIR10	AT1G64530.1	6E-36	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	3047578	3057363	+
GWHAAZE00000003	mRNA	3047578	3057363	+
GWHAAZE00000003	exon	3047578	3047716	+
GWHAAZE00000003	exon	3047891	3048373	+
GWHAAZE00000003	exon	3048999	3049958	+
GWHAAZE00000003	exon	3050133	3050460	+
GWHAAZE00000003	exon	3051018	3051165	+
GWHAAZE00000003	exon	3051269	3052364	+
GWHAAZE00000003	exon	3052539	3052712	+
GWHAAZE00000003	exon	3056378	3056418	+
GWHAAZE00000003	exon	3056842	3057048	+
GWHAAZE00000003	exon	3057127	3057363	+
GWHAAZE00000003	CDS	3047578	3047716	+
GWHAAZE00000003	CDS	3047891	3048373	+
GWHAAZE00000003	CDS	3048999	3049958	+
GWHAAZE00000003	CDS	3050133	3050460	+
GWHAAZE00000003	CDS	3051018	3051165	+
GWHAAZE00000003	CDS	3051269	3052364	+
GWHAAZE00000003	CDS	3052539	3052712	+
GWHAAZE00000003	CDS	3056378	3056418	+
GWHAAZE00000003	CDS	3056842	3057048	+
GWHAAZE00000003	CDS	3057127	3057363	+

Transcript Sequence
>GWHTAAZE010309 ATGACGACGGAAGTTTCAGACTATACTATTGACGATTTCGTTAGAGATATGGCTCCTTTCAATCTGTCATACAGGAAGCCGAGAGGTAGAAACGATATGTGGGTTTTCTGGAGCCAAGAAGGAGAAGGAGAAGGAGAAGGTGGCAATGATCTGGATCTAGTTACTGAAATACTTACCAACAACAATTGGAAGAATGTTCAAGAGTACTTAAAATATATACTTTGCGACGCTAAAAGCACTAGTCGGGCCAATGTTGCTCTAATTCAATTCTGGGCTCCCACTACTAATACTACTAATATGATTGAGGGGCGATGGGTGTTTAAAACATCAAATCAACCTTTTGCTTTTTATAGAATTGAGAGAGGAATTTGTGAGTACAGGAAGTCTTGTACCAGCCTTGAATTTAATGTCTTCAAAGATGAAGGAAAAAAATATGGATATGACTTTGGTAGTAAAATTGGGCGAGTCTTCCGGGATAAAGAAGTAGCTTGCTTTAACATTCCGCTGCTTGATTTTGTTCACCAAAAATATGGCGGTACACCGAGGTCTTTGTTACTGCCCCTCTTCAAACCTTCCGGCCGGTGCTGTTCTGGTGTACTTGAGCTTGTAGGTTCTTACAAAGGGATATCTTATCTTGAAATTACTTGCATACTTGCTCTACAGCAAGGTACAGAAATAGAAGAGATCAATAAGGCATTGCAAAGGGTGTGTACAACACACCAGTTACCCCTTGCTCAGATCTGGATTCCATGCTGTAGTAGCACTGCCATGGCCTATGTTGATAGCCCAGGCAAGCGCTGCCATTCCCCTTATTTAAGCTGCAGTAATAAATTTTCATCATCAATATCTCAGAATGGTGATGCATATATCCATTATAAAGCGATAGAGGGATTCAACTTGGACTGGAAGCGTGTTAAATTTAGAAAGGGTCGGAGTATTGTTGGTAAGGCACTTTTGTACCATAAGCCTTGCTTCTGCAGGGATGTAACCCAACTCCCCTGGGGTGAGTACCCCACATTTCATCGCTCACGCATGTTTAAGTTTACTGGCTGTTATGCAATTTGGTTGCGTTGTAATTGCAGTAAGAATCATGATTTTGTGCTAGAGTTCTACATGCCCCATTGGAATACAATCTCTGGAGATCCCCGGACCGTTTTGGGGTTGCTATTGGCAACAGTGAAGAAGCAACTTCCAGGGTTTAAAATTAGTTCAGTGGAAGAGGAATCATGTGTGGAAGTATATGAAATTTCTGTGAATGATGATAAACCTAAGTCTGTTATAATATCCCAAACTTCTAGTGTTAAACCTGTACCTGAATCCTTTGTAAATGAGAAGGAAACGGTGCAGAACGAAGTGGTAGGTGAAACTGTTATAAACAGCAGATCAAATATTCTTGGTTTGGAAGAAAACGGCATAGATGTTTGGCATTCAGATTATACCATTGACGATTTCCTTAAAGATATGGCTCCTTTCAATCTGTCATACATGGAGCCGAGAACTGGAAACATTAAGTGGGTTTTCTGGAGCCAAGAAGGAGAAGGTTGGCCTCTAACTAATAATGTCTTATCATTATCATCATTATGTGATGGTGATCTGGATTCAGTTACTGAAACAGTTACCAACAACAATCGGGAGAATGTTCAAGAGTACTTAAAATATATACTTTTCAATGCTGAACACACTAGTTGGGCCAATGTTGCTCTAATTCAATTTTGGGCTCCCACTACTACTACTAGTACGATTGGGGGGCGTTGGGTGCTTAAAACATCAAATCAACCTTTTGGTCTTTACGGACTTGAGAGAAGAATTTGTGAATACAGGAAGCATTGTACTAGCCTTGAATTTAATGTCCTCCAAGATGAAGAATACAATGAAGATGAGTTTGGTAGTGTAATTTGGCAAGTCTTCAGAAGCACTGTGGCATTTTCATCTTTGCTTCTAGGGGGTATTGTCTTCCATTTCAAACCGATTTCAAGATTACTCTGTCAAAATTTCTCTAAATCAGCACTTTCCTTGCAGGAAGTGAACTTTATGAAACCCTCCCCTTTAAAATTGCAAGAAAGTACAGAAACAGAAGAGATCAATAGGGCGCTGCAAGGGGTGTGTACAACACACCAGTTACCCCTTGCTCAAATCTGGATTCCATGCTGTACTAGCACTGCCATGGCCTATGTTGATGACCCGGGCGAGCGCTGCCATTCCCCTTATTTAAGCTGCAGCAATAAATTTTCATCATCAATATCTCAGAATGGTGATGCAGATTTCTATTATAGCATGGAAGGCTTCAATGGTGGCTGCCAGAATCATGATTTTAGGACGGGTCAGGATATTGTTGGTAAGGCACTTTTATACCATAAGCCTTACTTCTGCAGGGATGTAAGACAAATCGTCCCATCTGAGTACCCCATATTCAATAAAGCATGGAATAAGTTAGGTGGCTGTTGTGCAATTTGGTTGCACAGTACTCGCACTAATCATGATTATGTGCTAGAGTTCTTATTCCCCCCTTGGAAGGCTTTCCGTAGAGTTCTGCAGACATGCTTGGAGTTGCTATTGGCAACAGTGAAGATGCAACTTCCAGGTTTTAAAATTAGTTCAGTGGGAGAGGAATCATGTGTTGAAGTACATGAAATTTCTGTGAATGATGATGAACCTCATTCTGTTATAATATCCCAAACTTTTAGTGTTAAACTCTTACCCGAATCCTTTGCAAATGAAAAGGAAACAGTGCAGAACGAAGTGGTAGGCGAAACTATTATAGACATTGGATCATATATTCGTGGTTTGGAACAAAACGGCATAGTTTTTTGTCATTCAGAGAAAAGAGCTGGAGAGGAATTGTTTGTTGAAGCAGCTATGAATGAAGAAATAACCAGAAGGCTTCCACCCATGTTTGAATCCTTGCGAAATGAAAATGAAGTGGTGCTGCAGCCATCAGATGACAAGCCAACCATGGAAGAAGCTGTTAGAAAGAATGAATTGAATGTTGGGATTGTAAAGCAAACCATTGAGAATGTTACATCTTCAGAGAGAATATTCAGCAGAGCAGAGACATTGGAGAGAGAATATAGAACAACTGACATTTCATTAAGTCGCGAGGATCTCATAAAACATTTTGGAAAGAAGCTTGACGATGCTGCAAATATACTTGGGGTTAGTAGATCTACACTGAAACGTGCGTGTAGGCTTCATAATATCGGCAAGTGGCCAGTTCCTAAGAGAAACAAGGTTAATGCCCTTCCTGTTCGCAGTGGCAATGAAGGAATTGAAGGAACTTACAAGGGAGACCCCTCGTGTTCTGACCCACGTCCTAATCCCATCACAGCAGGAAAGTGCAGAATAGAAGAGATCAATAAGGCATTGCAAGTGACATACTTGGAGATGCTATTGGCAACAGTGAAGAAACAATTTCCCAGTTTTAAAATTGGTTCAGTGGTAGAGGAATCATGTGTTAAAGTTTCTGAGATTCTTGTCAATTATGATGAAGCTTATTCTGCTATGATATCCCAAACTACTAGCGTTCAACCCATACCCAAATCCTTTGCAAATGAATGGCAAACAGTGCAGAACGAAGTGAAAACAACTGGAGAGGAATTGTTTGTCGAAGCTGCTATGAATGATGAACTAACCATAAGTCTTCCACCCATGCCTGAATCTTTGCGAAATGAAAATGAAGTGGTGCAGCAACTATCAGATGATGAACCAACCATGGAAGAAGCTGTTAGAAAGAATGAATTGAATGTTGCGATTGTAAAGCAAATCGGTGCGGCTGTTACATCTTCAGAGAGAATATTCAGCATAGCAAAGGCATAG

Network for GWHGAAZE010297

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	1030	1077	8.20E-14

Protein Sequence

>GWHPAAZE010303
MTTEVSDYTIDDFVRDMAPFNLSYRKPRGRNDMWVFWSQEGEGEGEGGNDLDLVTEILTNNNWKNVQEYLKYILCDAKSTSRANVALIQFWAPTTNTTNMIEGRWVFKTSNQPFAFYRIERGICEYRKSCTSLEFNVFKDEGKKYGYDFGSKIGRVFRDKEVACFNIPLLDFVHQKYGGTPRSLLLPLFKPSGRCCSGVLELVGSYKGISYLEITCILALQQGTEIEEINKALQRVCTTHQLPLAQIWIPCCSSTAMAYVDSPGKRCHSPYLSCSNKFSSSISQNGDAYIHYKAIEGFNLDWKRVKFRKGRSIVGKALLYHKPCFCRDVTQLPWGEYPTFHRSRMFKFTGCYAIWLRCNCSKNHDFVLEFYMPHWNTISGDPRTVLGLLLATVKKQLPGFKISSVEEESCVEVYEISVNDDKPKSVIISQTSSVKPVPESFVNEKETVQNEVVGETVINSRSNILGLEENGIDVWHSDYTIDDFLKDMAPFNLSYMEPRTGNIKWVFWSQEGEGWPLTNNVLSLSSLCDGDLDSVTETVTNNNRENVQEYLKYILFNAEHTSWANVALIQFWAPTTTTSTIGGRWVLKTSNQPFGLYGLERRICEYRKHCTSLEFNVLQDEEYNEDEFGSVIWQVFRSTVAFSSLLLGGIVFHFKPISRLLCQNFSKSALSLQEVNFMKPSPLKLQESTETEEINRALQGVCTTHQLPLAQIWIPCCTSTAMAYVDDPGERCHSPYLSCSNKFSSSISQNGDADFYYSMEGFNGGCQNHDFRTGQDIVGKALLYHKPYFCRDVRQIVPSEYPIFNKAWNKLGGCCAIWLHSTRTNHDYVLEFLFPPWKAFRRVLQTCLELLLATVKMQLPGFKISSVGEESCVEVHEISVNDDEPHSVIISQTFSVKLLPESFANEKETVQNEVVGETIIDIGSYIRGLEQNGIVFCHSEKRAGEELFVEAAMNEEITRRLPPMFESLRNENEVVLQPSDDKPTMEEAVRKNELNVGIVKQTIENVTSSERIFSRAETLEREYRTTDISLSREDLIKHFGKKLDDAANILGVSRSTLKRACRLHNIGKWPVPKRNKVNALPVRSGNEGIEGTYKGDPSCSDPRPNPITAGKCRIEEINKALQVTYLEMLLATVKKQFPSFKIGSVVEESCVKVSEILVNYDEAYSAMISQTTSVQPIPKSFANEWQTVQNEVKTTGEELFVEAAMNDELTISLPPMPESLRNENEVVQQLSDDEPTMEEAVRKNELNVAIVKQIGAAVTSSERIFSIAKA

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.470
	SRR3591706	second leaf	0.192
	SRR3591707	mature leaf	0.389
	SRR3591708	Shoot apex	0.184
	SRR3591709	Stem	0.864
	SRR3591710	White floral bud	0.054
	SRR3591711	White flower	0.144
	SRR3591712	Green floral bud	0.070
	SRR3591713	Yellow flower	0.079
SRP173429	SRR8316895	Juvenile bud stage	1.322
	SRR8316896	Juvenile bud stage	1.681
	SRR8316897	Juvenile bud stage	0.069
	SRR8316894	Third green stage	1.212
	SRR8316900	Third green stage	1.246
	SRR8316901	Third green stage	2.132
	SRR8316898	Complete white stage	0.237
	SRR8316899	Complete white stage	1.709
	SRR8316903	Complete white stage	0.745
	SRR8316902	Silver flowering stage	0.250
	SRR8316904	Silver flowering stage	0.450
	SRR8316905	Silver flowering stage	0.164
	SRR8316906	Gold flowering stage	0.430
	SRR8316907	Gold flowering stage	0.327
	SRR8316908	Gold flowering stage	0.088
SRP132670	SRR6706286	Control	1.555
	SRR6706287	Light intensity 50%	1.741
	SRR6706288	Light intensity 20%	1.974
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.432
	CNS0095593	Slightly white alabastrum(diploid) 2	3.881
	CNS0095594	Slightly white alabastrum(diploid) 3	2.855
	CNS0095595	Whole white alabastrum(diploid) 2	2.672
	CNS0095596	Whole white alabastrum(diploid) 3	1.952
	CNS0095597	Whole white alabastrum(diploid) 4	2.952
	CNS0095598	Silvery flower (diploied) 1	3.184
	CNS0095599	Silvery flower (diploied) 2	1.546
	CNS0095600	Silvery flower (diploied) 3	1.167
	CNS0095601	Golden flower (diploid) 1	2.359
	CNS0095602	Golden flower (diploid) 2	1.249
	CNS0095603	Golden flower (diploid) 3	1.176
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.522
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.593
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.129
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.302
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.394
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.234
	CNS0095610	Silvery flower (tetraploid) 1	0.812
	CNS0095611	Silvery flower (tetraploid) 2	0.507
	CNS0095612	Silvery flower (tetraploid) 3	0.361
	CNS0095613	Golden flower (tetraploid) 1	0.299
	CNS0095614	Golden flower (tetraploid) 2	0.526
	CNS0095615	Golden flower (tetraploid) 3	0.152
CRA001975	CRR073297	Stem 1	4.365
	CRR073298	Stem 2	3.137
	CRR073299	Stem 3	0.820
	CRR073300	Leaf 1	3.667
	CRR073301	Leaf 2	3.620
	CRR073302	Leaf 3	0.620
	CRR073303	Juvenile bud 1	0.431
	CRR073304	Juvenile bud 2	0.117
	CRR073305	Juvenile bud 3	0.604
	CRR073306	Third green 1	0.029
	CRR073307	Third green 2	0.134
	CRR073308	Third green 3	0.103
	CRR073309	Second white 1	0.010
	CRR073310	Second white 2	0.112
	CRR073311	Second white 3	0.013
	CRR073312	Silver flowering 1	0.020
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.133
	CRR073316	Gold flowering 2	0.328
	CRR073317	Gold flowering 3	0.037
	CRR073318	Tawny withering 1	0.577
	CRR073319	Tawny withering 2	0.430
	CRR073320	Tawny withering 3	0.445