Gene detail

Detail information of GWHGAAZE010317

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009787473.1	6.053E-120	PREDICTED: F-box protein SKIP16 [Nicotiana sylvestris]
Swissprot	tr\|Q9LND7\|SKI16_ARATH	7E-96	F-box protein SKIP16
trEMBL	tr\|A0A068U788\|A0A068U788_COFCA	3E-111	Coffea canephora DH200=94 genomic scaffold, scaffold_10 {ECO:0000313\|EMBL:CDP03478.1}
TAIR10	AT1G06110.1	3E-79	SKP1/ASK-interacting protein 16

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	3332508	3336852	-
GWHAAZE00000003	mRNA	3332508	3336852	-
GWHAAZE00000003	exon	3336649	3336852	-
GWHAAZE00000003	exon	3332508	3333041	-
GWHAAZE00000003	CDS	3336649	3336852	-
GWHAAZE00000003	CDS	3332508	3333041	-

Transcript Sequence
>GWHTAAZE010329 ATGGATTTGGAGAGTGCAGGAGGTTTAGCAATTCACACAATCATATCCAAATTGGGACCTAATGATACAGCTGCAGTTGCCTGTGTGAGCAAGAGGTTTAGGGTTTATGCATCTGATGATTCTCACTGGTCCAAATTCTGTGCCGATGATCTCCACCTCTCTTCCCCTCAAAACCCTAATGGAAACCCCACCAATTCCTTCAAGGAAGCTTATCAAACATGGCGGGATTCTTTTCATATGTATCCTTGGTCCCTGGTTAAACGGGTTAAAAGATGCTGGGGAAGACTTCAAAGCTGGTTGGCAGTGAATTTCCCAGAAGCCCTAGGTACCTTGCGCAAGGGTGCATCTGAGGATGAAATAAATGAGTTGGAGAAGTGTTTTAAAGTGAAACTGCCTCTTCCTACAAGAGTTATCTATCGCTTTTGTGATGGGCAGGAAGTACCAAGTATAGAACTCATTGATCACATGCGTGGAGCTTCATTGGGCCTTATTGGAGGTTATTGTTTTTATGACCACATGGTGAATGTGTTCTTGTTGCCCTTGAAACATGTTATGGTAGAAACAGGATATATTGTCCGTCGCCTTGGATTCAGCAGCAGAGTTGAATATATCGTCGTTGCATCTTCTTTTACTTCGGGTGAAAAGATTTTCTTCCTTAACTGTGCTAATGGTCAACTCTATGTTGGTACCAGGAATCTTACAACTCATAAGGAAATGGTTCCTTGTGTCCCAAATTAG

Network for GWHGAAZE010317

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	11	47	0.00011

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.259
	SRR3591706	second leaf	17.245
	SRR3591707	mature leaf	15.928
	SRR3591708	Shoot apex	21.869
	SRR3591709	Stem	32.988
	SRR3591710	White floral bud	26.354
	SRR3591711	White flower	36.352
	SRR3591712	Green floral bud	33.109
	SRR3591713	Yellow flower	21.274
SRP173429	SRR8316895	Juvenile bud stage	31.432
	SRR8316896	Juvenile bud stage	35.257
	SRR8316897	Juvenile bud stage	10.484
	SRR8316894	Third green stage	17.711
	SRR8316900	Third green stage	52.269
	SRR8316901	Third green stage	49.952
	SRR8316898	Complete white stage	16.403
	SRR8316899	Complete white stage	55.613
	SRR8316903	Complete white stage	27.467
	SRR8316902	Silver flowering stage	14.856
	SRR8316904	Silver flowering stage	18.971
	SRR8316905	Silver flowering stage	9.555
	SRR8316906	Gold flowering stage	31.758
	SRR8316907	Gold flowering stage	30.734
	SRR8316908	Gold flowering stage	17.211
SRP132670	SRR6706286	Control	21.473
	SRR6706287	Light intensity 50%	23.400
	SRR6706288	Light intensity 20%	28.316
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.825
	CNS0095593	Slightly white alabastrum(diploid) 2	19.072
	CNS0095594	Slightly white alabastrum(diploid) 3	18.270
	CNS0095595	Whole white alabastrum(diploid) 2	21.174
	CNS0095596	Whole white alabastrum(diploid) 3	22.144
	CNS0095597	Whole white alabastrum(diploid) 4	18.751
	CNS0095598	Silvery flower (diploied) 1	25.843
	CNS0095599	Silvery flower (diploied) 2	24.624
	CNS0095600	Silvery flower (diploied) 3	39.367
	CNS0095601	Golden flower (diploid) 1	19.580
	CNS0095602	Golden flower (diploid) 2	36.373
	CNS0095603	Golden flower (diploid) 3	38.825
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.293
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.144
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.793
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.544
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.062
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.915
	CNS0095610	Silvery flower (tetraploid) 1	27.040
	CNS0095611	Silvery flower (tetraploid) 2	24.503
	CNS0095612	Silvery flower (tetraploid) 3	16.367
	CNS0095613	Golden flower (tetraploid) 1	6.588
	CNS0095614	Golden flower (tetraploid) 2	15.681
	CNS0095615	Golden flower (tetraploid) 3	13.233
CRA001975	CRR073297	Stem 1	38.351
	CRR073298	Stem 2	38.516
	CRR073299	Stem 3	39.757
	CRR073300	Leaf 1	36.360
	CRR073301	Leaf 2	38.437
	CRR073302	Leaf 3	45.905
	CRR073303	Juvenile bud 1	43.990
	CRR073304	Juvenile bud 2	37.094
	CRR073305	Juvenile bud 3	46.246
	CRR073306	Third green 1	17.286
	CRR073307	Third green 2	9.435
	CRR073308	Third green 3	11.922
	CRR073309	Second white 1	22.243
	CRR073310	Second white 2	17.986
	CRR073311	Second white 3	11.450
	CRR073312	Silver flowering 1	13.463
	CRR073313	Silver flowering 2	16.704
	CRR073314	Silver flowering 3	9.499
	CRR073315	Gold flowering 1	13.287
	CRR073316	Gold flowering 2	21.278
	CRR073317	Gold flowering 3	22.505
	CRR073318	Tawny withering 1	30.205
	CRR073319	Tawny withering 2	20.671
	CRR073320	Tawny withering 3	26.354