Detail information of GWHGAAZE010368


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007033876.10GRAS family transcription factor [Theobroma cacao]
Swissprottr|Q9SZF7|SHR_ARATH6E-143Protein SHORT-ROOT
trEMBLtr|A0A061EK79|A0A061EK79_THECC0GRAS family transcription factor {ECO:0000313|EMBL:EOY04802.1}
TAIR10AT4G37650.15E-117GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene50990725100289-
GWHAAZE00000003mRNA50990725100289-
GWHAAZE00000003exon50990725100289-
GWHAAZE00000003CDS50990725100289-
Transcript Sequence

Network for GWHGAAZE010368

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS324046.50E-93
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.237
SRR3591706second leaf3.611
SRR3591707mature leaf1.335
SRR3591708Shoot apex16.932
SRR3591709Stem14.990
SRR3591710White floral bud3.478
SRR3591711White flower0.989
SRR3591712Green floral bud14.274
SRR3591713Yellow flower0.643
SRP173429 SRR8316895Juvenile bud stage 5.267
SRR8316896Juvenile bud stage 6.280
SRR8316897Juvenile bud stage 2.018
SRR8316894Third green stage 2.767
SRR8316900Third green stage 7.138
SRR8316901Third green stage 7.917
SRR8316898Complete white stage 2.889
SRR8316899Complete white stage 24.573
SRR8316903Complete white stage 5.114
SRR8316902Silver flowering stage1.119
SRR8316904Silver flowering stage1.305
SRR8316905Silver flowering stage1.178
SRR8316906Gold flowering stage 0.638
SRR8316907Gold flowering stage 0.881
SRR8316908Gold flowering stage 0.248
SRP132670SRR6706286Control7.489
SRR6706287Light intensity 50%8.473
SRR6706288Light intensity 20%8.094
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.892
CNS0095593Slightly white alabastrum(diploid) 23.804
CNS0095594Slightly white alabastrum(diploid) 33.458
CNS0095595Whole white alabastrum(diploid) 23.997
CNS0095596Whole white alabastrum(diploid) 31.789
CNS0095597Whole white alabastrum(diploid) 44.732
CNS0095598Silvery flower (diploied) 11.912
CNS0095599Silvery flower (diploied) 22.458
CNS0095600Silvery flower (diploied) 31.826
CNS0095601Golden flower (diploid) 10.458
CNS0095602Golden flower (diploid) 20.353
CNS0095603Golden flower (diploid) 30.264
CNS0095604Slightly white alabastrum(tetraploid) 17.806
CNS0095605Slightly white alabastrum(tetraploid) 26.024
CNS0095606Slightly white alabastrum(tetraploid) 323.527
CNS0095607Whole white alabastrum(tetraploid) 17.332
CNS0095608Whole white alabastrum(tetraploid) 25.950
CNS0095609Whole white alabastrum(tetraploid) 34.783
CNS0095610Silvery flower (tetraploid) 10.738
CNS0095611Silvery flower (tetraploid) 20.669
CNS0095612Silvery flower (tetraploid) 30.565
CNS0095613Golden flower (tetraploid) 10.018
CNS0095614Golden flower (tetraploid) 20.202
CNS0095615Golden flower (tetraploid) 30.082
CRA001975CRR073297Stem 115.874
CRR073298Stem 214.007
CRR073299Stem 320.722
CRR073300Leaf 116.957
CRR073301Leaf 220.655
CRR073302Leaf 314.407
CRR073303Juvenile bud 117.963
CRR073304Juvenile bud 27.254
CRR073305Juvenile bud 333.068
CRR073306Third green 10.699
CRR073307Third green 20.676
CRR073308Third green 31.372
CRR073309Second white 10.456
CRR073310Second white 20.496
CRR073311Second white 30.151
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.066
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.160
CRR073316Gold flowering 20.717
CRR073317Gold flowering 30.322
CRR073318Tawny withering 12.003
CRR073319Tawny withering 20.688
CRR073320Tawny withering 32.862