Gene detail

Detail information of GWHGAAZE010369

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010644832.1	7.18857E-55	PREDICTED: F-box/LRR-repeat protein At4g14103-like [Vitis vinifera]
Swissprot	tr\|Q8L7H1\|FBL75_ARATH	1E-36	F-box/LRR-repeat protein At4g14103
trEMBL	tr\|A5BLF6\|A5BLF6_VITVI	6E-55	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN74740.1}
TAIR10	AT4G14103.2	9E-34	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	5152213	5154225	+
GWHAAZE00000003	mRNA	5152213	5154225	+
GWHAAZE00000003	exon	5152213	5153244	+
GWHAAZE00000003	exon	5153352	5153495	+
GWHAAZE00000003	exon	5153726	5154225	+
GWHAAZE00000003	CDS	5152213	5153244	+
GWHAAZE00000003	CDS	5153352	5153495	+
GWHAAZE00000003	CDS	5153726	5154028	+
GWHAAZE00000003	three_prime_UTR	5154029	5154225	+

Transcript Sequence
>GWHTAAZE010381 ATGGGTCCAAACCCTAAATCCACTAAGCTTCTAGTACAACAACAAACCCTAACCCTAGATGATAATAATCCCACCGGAATTGACAGAATCAGCAATTTGCCCGACGAGATTCTGTGCCATATCCTCTCATTCCTCCCCACTAAATACGCTGTTGGTACTTCAGTTCTGTCCACACGATGGAAGAATCTCTTCCCTTTCATCTCCAAACTCTCACTCAACTTCGATGACTCTTTACTCTTACATCCCCACAAAGAAAACCCTAATTTGATCCCTAATTTTGTTAAATTTATGTACAATGTGATGAACCGTATGATAATTACTGCGCCGCGCATTTTTAGCTTTATTCTTAAATGTCAACGAGATTATGAGGGAGTTAGAGAACTCACTGGTGAGTTTGATGAGGATAATGACGGAAAATATTCGCATCTTATTATCTGGATTTATTTGGCGTTACGTAAGAATGTTAGAGAACTCACTGTTCATGTTGAAAATGAGGATAGGGATTTTATTCGGTTCCCTGAACGGCTTTTTAAATGCTTGAGTGTAATGTGGGTTACTATCGGCGGGCGTTTCTTTTTTGATGTTCCCACTATGGTTCTTTTGCCGAATATACGGAGCATGTTCTTGGATTGTGTAATGTTTCCCAACGGTGAAGCGGTTGAACATCTTATTAGTGGGTGCTTTTTCATTGAAGAATTTTGTTTAGAGAGATGTGATTTTCAAGATCTTGATGTTCTTAAGATATCAAGTACTACGCTTAAGCTTTTGGTGATAATTAATTGTAAGTGGGATGGGAAGTATGAAGTTGTGCTTGATGTTCCGAATCTTGAGCTCTTTCATTACCAGGAGGATGCTATTGCTTATGACTATACAGTCAAGAATATGGGCTGCGTTCGTAAAGCGCACATAGACATTGGAATTAGTTGGGATCAAGGACTAGAGGATGGACCTCGTTATGAGGCTAATGCAGTTGGGCTTGTTGCGGTTTGCTCGAATCTTGAAACACTATATTTATCACAGAATTCATTGCATGCCATCCAATGGTACTGGGGATTCGTAAAACCCTTTTCTAATTTGACTACCTTGAAGCTTGGTCTTATTGACGACTGTGGTTGGCTTTTTTTGGCACGCTTGCTCGATAGTATGCCCAACCTTGAAGTTCTTGAATTCACTTGGGGGTTTATGGAGTACGAAGACTTTCCGGATTTTGTATCTCATGTGGCCAAACGTGAGCCTCAATGTCTGTCATCCCATCTTGACAAAGTTAAGATTGAAGAATTCACTGGGGAAGAAGATGAGCTCAGTGTGGTAGAATTTTTCTTAAAGAGTGCAAAAGTTCTGAGGGAGCTGGAAATTGTTTCTGATTTGTCTTCGGAAGAGCAGTTGAACATTAGCAAAAAAGTATCATTGTTTCCTAAATGCTCAGCTGCCTGTGAGATTGTGTTTACAAGTACTGAAGAAAGAAAGTATGATTTATAAAATTTTCTAGTGTGATGAAAGGACAGTGAAAATATTAATGAATTGTTTGATGTTTTTCTTCTATATTGAGTACATTCGCCATTTTCTTGATTGTTTCTTGGATCTATCTTTGTTCTAGTTTTCACCGCTGTGATCTATACTGATAGGAACCATTATGTTTATCATAAAATTTTCCTTCCGATGTCTTTGTTGGAGCA

Network for GWHGAAZE010369

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	29	63	3.50E-08
PF07723.14	LRR_2	205	227	0.00022
PF08387.11	FBD	412	452	2.20E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.370
	SRR3591706	second leaf	0.781
	SRR3591707	mature leaf	0.411
	SRR3591708	Shoot apex	1.351
	SRR3591709	Stem	0.844
	SRR3591710	White floral bud	2.002
	SRR3591711	White flower	1.850
	SRR3591712	Green floral bud	2.057
	SRR3591713	Yellow flower	1.933
SRP173429	SRR8316895	Juvenile bud stage	1.939
	SRR8316896	Juvenile bud stage	2.176
	SRR8316897	Juvenile bud stage	0.077
	SRR8316894	Third green stage	0.996
	SRR8316900	Third green stage	2.393
	SRR8316901	Third green stage	1.867
	SRR8316898	Complete white stage	1.403
	SRR8316899	Complete white stage	3.550
	SRR8316903	Complete white stage	1.982
	SRR8316902	Silver flowering stage	1.088
	SRR8316904	Silver flowering stage	0.951
	SRR8316905	Silver flowering stage	0.695
	SRR8316906	Gold flowering stage	1.254
	SRR8316907	Gold flowering stage	1.125
	SRR8316908	Gold flowering stage	0.586
SRP132670	SRR6706286	Control	0.951
	SRR6706287	Light intensity 50%	1.353
	SRR6706288	Light intensity 20%	1.249
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.845
	CNS0095593	Slightly white alabastrum(diploid) 2	1.651
	CNS0095594	Slightly white alabastrum(diploid) 3	1.648
	CNS0095595	Whole white alabastrum(diploid) 2	1.530
	CNS0095596	Whole white alabastrum(diploid) 3	0.779
	CNS0095597	Whole white alabastrum(diploid) 4	1.902
	CNS0095598	Silvery flower (diploied) 1	1.109
	CNS0095599	Silvery flower (diploied) 2	1.913
	CNS0095600	Silvery flower (diploied) 3	2.433
	CNS0095601	Golden flower (diploid) 1	0.751
	CNS0095602	Golden flower (diploid) 2	1.886
	CNS0095603	Golden flower (diploid) 3	1.755
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.442
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.672
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.488
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.758
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.241
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.110
	CNS0095610	Silvery flower (tetraploid) 1	1.878
	CNS0095611	Silvery flower (tetraploid) 2	1.986
	CNS0095612	Silvery flower (tetraploid) 3	1.773
	CNS0095613	Golden flower (tetraploid) 1	0.787
	CNS0095614	Golden flower (tetraploid) 2	1.366
	CNS0095615	Golden flower (tetraploid) 3	0.951
CRA001975	CRR073297	Stem 1	1.415
	CRR073298	Stem 2	0.683
	CRR073299	Stem 3	0.995
	CRR073300	Leaf 1	1.505
	CRR073301	Leaf 2	1.068
	CRR073302	Leaf 3	0.313
	CRR073303	Juvenile bud 1	0.843
	CRR073304	Juvenile bud 2	1.180
	CRR073305	Juvenile bud 3	0.927
	CRR073306	Third green 1	0.278
	CRR073307	Third green 2	0.124
	CRR073308	Third green 3	0.832
	CRR073309	Second white 1	1.190
	CRR073310	Second white 2	0.560
	CRR073311	Second white 3	0.884
	CRR073312	Silver flowering 1	0.244
	CRR073313	Silver flowering 2	0.460
	CRR073314	Silver flowering 3	0.636
	CRR073315	Gold flowering 1	1.052
	CRR073316	Gold flowering 2	1.408
	CRR073317	Gold flowering 3	0.744
	CRR073318	Tawny withering 1	0.537
	CRR073319	Tawny withering 2	0.298
	CRR073320	Tawny withering 3	0.454