Gene detail

Detail information of GWHGAAZE010370

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006356398.1	3.05853E-59	PREDICTED: protein NLP7-like [Solanum tuberosum]
Swissprot	tr\|Q8RWY4\|NLP6_ARATH	3E-40	Protein NLP6
trEMBL	tr\|M1D5T7\|M1D5T7_SOLTU	9E-60	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400082373}
TAIR10	AT1G64530.1	2E-38	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	5180021	5185920	-
GWHAAZE00000003	mRNA	5180021	5185920	-
GWHAAZE00000003	exon	5180021	5180502	-
GWHAAZE00000003	exon	5181169	5182267	-
GWHAAZE00000003	exon	5182902	5183521	-
GWHAAZE00000003	exon	5183624	5184500	-
GWHAAZE00000003	exon	5184597	5184635	-
GWHAAZE00000003	exon	5185079	5185686	-
GWHAAZE00000003	exon	5185767	5185920	-
GWHAAZE00000003	CDS	5185767	5185920	-
GWHAAZE00000003	CDS	5185079	5185686	-
GWHAAZE00000003	CDS	5184597	5184635	-
GWHAAZE00000003	CDS	5183624	5184500	-
GWHAAZE00000003	CDS	5182902	5183521	-
GWHAAZE00000003	CDS	5181169	5182267	-
GWHAAZE00000003	CDS	5180021	5180502	-

Transcript Sequence
>GWHTAAZE010382 ATGACGATGGAAGTTTCAGACTATGCCATTGACGATTTCCTTAGAGATATGGCTCCTTTCAATCTGTCATACAGGAAGCCGAGAGGTAGAAACGATATGTGGGTTTTCTGGAGCCAAGAAGGAGAAGCAGAAGGTTGGCAAATACACTATCTATTTGGTTTCAATTTTTTAACTATTAAATTATATATATCATATTTTTATTTATTTACATATCATAATTAAATTACAGGTAGCAATGATCTGGATCTAGTTACTGAAATACTTGCCAACAACAATTGGAAGAATGTTCAAGAGTATTTAAAATATATACTTTGCGGGGCTAAAAGCACTAGTCGGGCCAATGTTGCTCTAATTCAATTCTGGGCTCCCACTACTAATACTACTAATATGATTGAGGGGCGATGGGTGTTTAAAACATCAAATCAACCTTTTGCTTTTTATAGAATTGAGAGAGGAATTTGTGAGTACAGGAAGTCTTGCACCAGCCTTGAATTTAATGTACTCAAAGATGAAGGAAAAAAATATGGATGTGATTTTGGTAGTCAAATTGGGCGAGTCTTCCGGGATAAAGAAGTAGATTACTTTAACATTCCGCTGCTTGATTTTTTTCCCCAAAAATATGGCTGTACACTGATGTCTTTGTTACTGCCCCTCTTCAAACCTTCCGCCCGGTGCTGTTCTGGTGTACTCGAGCTTGTAGGTTCTTACAAAAGTTTTGTCCTTCCTTATGAAATACACAACCTAGCCAAAGTTATATTTGAGGAACCAAACTTTATAAATCCCCCCTCTCTCGAGTTGCAACGAAGTACAGAAATAGAAGAGATCAATAAGGCGTTGCAAGGGGTGTGTACAACACACCAGTTACCCCTTGCTCAGATCTGGATTCCATGCTGTAGTAGCACTGCCATGGCCTATGTTGATAGCCCAGGCAAGCGCTGCCATTCCCCTTATTTAAGCTGCAATGATAAATTTTCATCATCAATATCTCAGAATGGTGATGCATATATCCATTATAAAGCGATACAAGGATTCAACTTGGACTGGAAGCGTCTTAAATTTAGAAAGGGTCGGAGTATTGTTGGTAAGGCACTTTTGTACCATAAGCCTTGCTTCTGCAGGGATGTAACCCAACTCCCCTGGGATGAGTACCCCACATTGCATCATTCACGCATGTTTAAGTTTACTGGCTGTTACGCAATTTGGTTGCGATGTAATTGCACTAAGAATCATGATTTTGTGCTAGAGTTCTACATTCCCCATTGGAACACAATCTCTAGAGATCCGCAGACAATCTTGGGGTTGCTATTGGCAACAGTGAAGAAGCAACTTCCAGGGTTTAAAATTAGTTCAGTGGAAGAGGAATCGTGTGTGGAAGTATATGAAATTTCTGCTAATGATGATAAACCTAAGTCTGTTATAATATCCCAAACTTTTAGTGTTAAACCCGTACCCGAATCCTTTGTAAATGAGAACGAAACGGTGCAGAACAAAGTGGTAGGTGAAACTGTTATAAACAGCGGATCAAATGTTCTTGGTTTGGAAGAAAACGGTATAGATGTTTGGCATTCAGACTATACCATTGACGATTTCCTTAAAGATATGGCTCCTTTCAATCTGTCCTACATGGAGCCGAGAACTGGAAACATTAAGTGGGTTTTCTGGAGCCAAGAAGGAGAAGACTTTCCTATTTATATGTTCTTCAGTTGGTTATAAATTTTTAACTATTAAATTATATATCATATTTTTATTTATTTATTTATTTATCATATAATTACAGATGATGGTGATCTGGATTCAGTTACTGAAACAGTTACCAACAACTATCGGGAGAATGTTCAAGAGTACTTAAAATATATACTTTGCAATGCTGAACACACTAGTTGGGCCAATGTTGCTCTAATTCAATTTTGGGCTCCCACTACTACTACTACTACTAGTATGATTGGGGGGCGCTGGGTGCTTAAAACATCAAATCAACCTTTTGGTCTTTACGGACTTGAGAGAAGAATTTGTGAATACAGGAAGCAATGTACTAGCCTTGAATTTAATATCCTCCAAGATGAAGAATACAATGAAGATGAATTTGGTAGTGTAATTTGGCAAGTCTTCAGGTATAAAAAAGCAAAATATGATCTGTTGGGTGATTTTGCTCGCAAATGCGGCATAGGGACATCTTACTTTCTGCCCCTCTTCAAACCTTCCGGCTGGTGCTGTTCTGGTGTACTTGAGATCTCAGTTACTTTCCAAAGTAGTTTCTTTCTTTTTGATCTATACAAACTAGCCAAAGATATATTTAAGGAAAGTACAGAAATAGAAGAGATCAATACGGCGTTGCAAGGGGTGTGTACAACACACCAGTTACCCCTTGCTCAAATCTGGATTCCATGCTGTACTAGCACTGCCATGGCCAATGTTGATGACCCGGGCGAGCACTGCCATTCCCCTTATTTAAGCTGCAGCAATAAATTTTCATCATCAATATCTCAGAATAGTGATGCAGATTTTTATTGTAGCATGGAAGGCTTCAACAGTAGCTGCCAGAATCCTGATTTTAGGACGGGTCAGGGTATTGTTGGTAAGGCACTTTCATGCCATAAGCCTTGTTTCTGCAGGGATGTAGGACAAATCGTCCCGTCTGAGTACCCCATATTCAATAGTAAAGCATTGAATAAATTAGGTGGCTGTTGTGCAATTTGGTTTCACAGTACTCGCACTAATCATGATTATGTGCTAGAGTTCTTATTTCCCCCTTGGAAGGCTTTCCATAGAGTTCTGCAGACATGCTTGGAGTTGCTATTGGCAACAGTGAAAATGCAACTTCCAGGTTTTAAAATTAGTTCAGTGGGAGAGGAATCATGTGTTGAAGTACATGAAATTTCTGTGAATAATGATGAACCTCATTCTGTTATAATATCCCAAACTTTTAGTGTTAAACTCTTACCCAAATCCTTTCTAAAAGAAAAGGAAATGGTGCAGAATGAAGTGGTAGGCGAAACTATTATAGACATTGGATCATATATTCTTGGTTTGGAACAAAATGGCACAGTTTTTTGTCATTCAGAGAAAAGAGCTGGAGAGGAATTGTTTGTTGAAGCAGCTATGAATGAAGAAATAACCAGAAGGCTTCCACCCATGTTTGAATCCTTGCGAAATGAAAATGAAGTGGTGCTGCAGCCATCAGATGACAAGCCAACCATGGAAGAAGCTGTTAGAAAGAATGAATTGAATGTTGGGATTGTAAAGCAAACCATTGAGGATGTTACATCTTCAGAGAGAATATTCAGCAGAGCAGAGGCATTGGAGAGAGAATATAGAACAACTGACATTTCATTAAGTCGCGAGGATCTCATAAAACATTTTGGAATGAAGCTTGATGATGCTGCAAATATACTTGGGGTTAGTAGATCTACACTGAAGCGTGTGTGTAGGCTTCATAATATCGGCAAGTGGCCAGTTCCTAAAAGAAACAAGGTTAATGCCCTTCATGTTTGCAGTGGCAATGAAGGAATTGAAGGAACTTACAAGGGAGACCCCTCGTGTTCTGACCCACGTCCTAGTCCCACCACAGCAGGTAATTCTCACAAAACAAGTAATTCTAGACAAGAACAAGATATGGGAACCTTGACCGTAAAGGCAACACATGGAGGTCATACTATTCGGTTTGACCTTCCATTTTTATCAAGAAAGACGGATTTAGTGAACCAGGTGACAAAGAGGCTACCGTTGAATGAAGGATCTTTTAATATCAAGTATCAGGATGAAGAGAATGACTGGATTTTAATTACCTGTGATGAGGACCTGGAGCAGTGTATTCGTATTTGGAAGGGAAAGAGTATAATCAAAATGTTGGTCGAGCCAATTACCAATCAAGCACCTTGA

Network for GWHGAAZE010370

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	1108	1155	7.90E-15
PF00564.25	PB1	1205	1282	1.90E-14

Protein Sequence

>GWHPAAZE010376
MTMEVSDYAIDDFLRDMAPFNLSYRKPRGRNDMWVFWSQEGEAEGWQIHYLFGFNFLTIKLYISYFYLFTYHNITGSNDLDLVTEILANNNWKNVQEYLKYILCGAKSTSRANVALIQFWAPTTNTTNMIEGRWVFKTSNQPFAFYRIERGICEYRKSCTSLEFNVLKDEGKKYGCDFGSQIGRVFRDKEVDYFNIPLLDFFPQKYGCTLMSLLLPLFKPSARCCSGVLELVGSYKSFVLPYEIHNLAKVIFEEPNFINPPSLELQRSTEIEEINKALQGVCTTHQLPLAQIWIPCCSSTAMAYVDSPGKRCHSPYLSCNDKFSSSISQNGDAYIHYKAIQGFNLDWKRLKFRKGRSIVGKALLYHKPCFCRDVTQLPWDEYPTLHHSRMFKFTGCYAIWLRCNCTKNHDFVLEFYIPHWNTISRDPQTILGLLLATVKKQLPGFKISSVEEESCVEVYEISANDDKPKSVIISQTFSVKPVPESFVNENETVQNKVVGETVINSGSNVLGLEENGIDVWHSDYTIDDFLKDMAPFNLSYMEPRTGNIKWVFWSQEGEDFPIYMFFSWLIFNYIIYHIFIYLFIYHIITDDGDLDSVTETVTNNYRENVQEYLKYILCNAEHTSWANVALIQFWAPTTTTTTSMIGGRWVLKTSNQPFGLYGLERRICEYRKQCTSLEFNILQDEEYNEDEFGSVIWQVFRYKKAKYDLLGDFARKCGIGTSYFLPLFKPSGWCCSGVLEISVTFQSSFFLFDLYKLAKDIFKESTEIEEINTALQGVCTTHQLPLAQIWIPCCTSTAMANVDDPGEHCHSPYLSCSNKFSSSISQNSDADFYCSMEGFNSSCQNPDFRTGQGIVGKALSCHKPCFCRDVGQIVPSEYPIFNSKALNKLGGCCAIWFHSTRTNHDYVLEFLFPPWKAFHRVLQTCLELLLATVKMQLPGFKISSVGEESCVEVHEISVNNDEPHSVIISQTFSVKLLPKSFLKEKEMVQNEVVGETIIDIGSYILGLEQNGTVFCHSEKRAGEELFVEAAMNEEITRRLPPMFESLRNENEVVLQPSDDKPTMEEAVRKNELNVGIVKQTIEDVTSSERIFSRAEALEREYRTTDISLSREDLIKHFGMKLDDAANILGVSRSTLKRVCRLHNIGKWPVPKRNKVNALHVCSGNEGIEGTYKGDPSCSDPRPSPTTAGNSHKTSNSRQEQDMGTLTVKATHGGHTIRFDLPFLSRKTDLVNQVTKRLPLNEGSFNIKYQDEENDWILITCDEDLEQCIRIWKGKSIIKMLVEPITNQAP

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.734
	SRR3591706	second leaf	0.402
	SRR3591707	mature leaf	0.465
	SRR3591708	Shoot apex	0.205
	SRR3591709	Stem	1.314
	SRR3591710	White floral bud	0.034
	SRR3591711	White flower	0.100
	SRR3591712	Green floral bud	0.093
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	3.591
	SRR8316896	Juvenile bud stage	3.483
	SRR8316897	Juvenile bud stage	0.042
	SRR8316894	Third green stage	2.043
	SRR8316900	Third green stage	5.199
	SRR8316901	Third green stage	6.479
	SRR8316898	Complete white stage	3.591
	SRR8316899	Complete white stage	5.522
	SRR8316903	Complete white stage	6.202
	SRR8316902	Silver flowering stage	1.428
	SRR8316904	Silver flowering stage	2.066
	SRR8316905	Silver flowering stage	0.705
	SRR8316906	Gold flowering stage	2.683
	SRR8316907	Gold flowering stage	2.181
	SRR8316908	Gold flowering stage	1.107
SRP132670	SRR6706286	Control	4.481
	SRR6706287	Light intensity 50%	6.009
	SRR6706288	Light intensity 20%	6.247
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.198
	CNS0095593	Slightly white alabastrum(diploid) 2	1.568
	CNS0095594	Slightly white alabastrum(diploid) 3	0.986
	CNS0095595	Whole white alabastrum(diploid) 2	1.786
	CNS0095596	Whole white alabastrum(diploid) 3	1.944
	CNS0095597	Whole white alabastrum(diploid) 4	1.964
	CNS0095598	Silvery flower (diploied) 1	2.091
	CNS0095599	Silvery flower (diploied) 2	1.594
	CNS0095600	Silvery flower (diploied) 3	5.159
	CNS0095601	Golden flower (diploid) 1	2.078
	CNS0095602	Golden flower (diploid) 2	1.941
	CNS0095603	Golden flower (diploid) 3	1.661
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.346
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.289
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.610
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.238
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.205
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.300
	CNS0095610	Silvery flower (tetraploid) 1	0.295
	CNS0095611	Silvery flower (tetraploid) 2	0.366
	CNS0095612	Silvery flower (tetraploid) 3	0.187
	CNS0095613	Golden flower (tetraploid) 1	0.088
	CNS0095614	Golden flower (tetraploid) 2	0.209
	CNS0095615	Golden flower (tetraploid) 3	0.080
CRA001975	CRR073297	Stem 1	3.002
	CRR073298	Stem 2	1.949
	CRR073299	Stem 3	0.500
	CRR073300	Leaf 1	2.717
	CRR073301	Leaf 2	3.454
	CRR073302	Leaf 3	0.382
	CRR073303	Juvenile bud 1	0.218
	CRR073304	Juvenile bud 2	0.261
	CRR073305	Juvenile bud 3	0.900
	CRR073306	Third green 1	0.202
	CRR073307	Third green 2	0.090
	CRR073308	Third green 3	0.377
	CRR073309	Second white 1	0.152
	CRR073310	Second white 2	0.486
	CRR073311	Second white 3	0.435
	CRR073312	Silver flowering 1	0.207
	CRR073313	Silver flowering 2	0.184
	CRR073314	Silver flowering 3	0.206
	CRR073315	Gold flowering 1	0.333
	CRR073316	Gold flowering 2	0.927
	CRR073317	Gold flowering 3	0.371
	CRR073318	Tawny withering 1	1.001
	CRR073319	Tawny withering 2	1.224
	CRR073320	Tawny withering 3	0.283