Gene detail

Detail information of GWHGAAZE010379

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354239.1	3.19735E-45	PREDICTED: protein NLP7-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q5NB82\|NLP3_ORYSJ	1E-23	Protein NLP3
trEMBL	tr\|M1B296\|M1B296_SOLTU	1E-45	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400035445}
TAIR10	AT4G24020.1	1E-14	NIN like protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	5356012	5359185	-
GWHAAZE00000003	mRNA	5356012	5359185	-
GWHAAZE00000003	exon	5356012	5356493	-
GWHAAZE00000003	exon	5356667	5357699	-
GWHAAZE00000003	exon	5357796	5357834	-
GWHAAZE00000003	exon	5358323	5358416	-
GWHAAZE00000003	exon	5358510	5358816	-
GWHAAZE00000003	exon	5359050	5359185	-
GWHAAZE00000003	CDS	5359050	5359185	-
GWHAAZE00000003	CDS	5358510	5358816	-
GWHAAZE00000003	CDS	5358323	5358416	-
GWHAAZE00000003	CDS	5357796	5357834	-
GWHAAZE00000003	CDS	5356667	5357699	-
GWHAAZE00000003	CDS	5356012	5356493	-

Transcript Sequence
>GWHTAAZE010391 ATGCCGATGCCGATGGAAGATCCCAACTATAAAATTGCCAATTTCCTTAGAGAAATGGGTCCTCTACAATACAGGGAGCCGAGAACTATAGACGATATATGGGTTTTCTGGAGCAAAGAAGAAGGAGAAGGAGAAGGCTGTGATCTCGATCCGGTTACTGAAACACTTTCCAACAATAATTGGAAGAATATTAAAGAGTACTTAAAATATTTACTTGGCAATGCTAAACGCACTAGTTGGGCCAATGTTGCTCTAATTCAATTTTGGGCTCCCACTACTACTAATACTAGTACGATTGGGAAGCACTGTATACTTCAAACATCAAATCAACCTTTTGGTTTTTACGGACTTGAGAGACGAATTTGTGAGTACAGGAAGCACTGTACCAGCCTTGAATTTCATGAAGACGACAATAAATATGAGTTAATTTGGCAAGTCTTCAGCTGGTGCTGTTCCGGTGTACTTGAGATCTCAGTTGCTTTCCACAGTAGTTTCTTTCATTTTGATCTATATAAACTAGCCAAAGATATATTCAAGGAAGCAAACTTTATGAATCCCCCCTCTCCCAAGTTGCAAAAAAGTACAGAAATAGAAGTGATGAATAAAGCGTTGCAAGTGGTGTGTACAACACACCAGTTACCCCTTGCTAATATCTGGATTCCATGCTGTACTAGCACTGCCATGGCCTGTGTTGATAGCCCGGGCGAGCGCTGCCATTCCCCTTATTTAAGCTGCAGCAGTAAATTCTCATCATCAATATCTCAGAATGGTCGGAGTGTTGTTGGTAAGGCACTTTTATACCATAAGCCTTGCTTCTGCAGGGATTTTAGCCAAATCCCCATGGCTGAGTACCTCTCAACCGAAGAATACGATGAAGAATTGTCTGATTTAGATGGCCGTTTTGCAATTTGGTTGTACAGTACTTGCACTAATCATGATTATGTGCTAGAGTTCTTATTTTCCCCTTGGAAAAATTTCTATGGAGTTCTTCACACAGGGTTGGAGTTGCTATTGGCAACAGTGAAGAAGCAACTTCCAGGTTTTAAAATTAGTTCAGCGGGAGAGGAATCATGTGTTGAAGTAAATGAAATTTCTGTGAAGGATGATGAACCTAACTCTGTTATAATAATATCCCACTGTTTTAGTGTTAAACCTGTACCTGAATCCTTTGCAAATGAAAAGGAAACGGTGCAAGACGAAGTGGTAGGTGAAACTGTTATAGACAATGGATCAAATATCCTTGGTTTGGAACAAAACGGCGTAGTTGTTGTTCATTCAGATAAAACAGCTGGAGAGGAATTGTTTGTTGCTACGGATGATGAAATAACCATAAGTCTTCCACCCATGTCTGAATCCTTGCGAAATGAACATGAATTGGTGCAGCAGCTATCAGATGATGAGCCAACCATGGAAGAAGCTGTTAGAAAGAATGGATTGAATGTTGGGATTGTAAAGCAAACCAATGCGTCTGTTACATCTCCAGAAAGAGAATTCAGTGGAGCAGAGGAATCGGAGAGAGAATATAGAACAACAGACATTACATTAAGTCGCAAGGATCTCACAAAACATTTTGGAAAGAAGCTTGACGAGGCTGCACGGATACTTAAGGTTAGTAGATCTACAATGAAGCGTGCGTGCAGACATCATAATATCAAGAAGTGGCCAGCTCCGAAGAGAAGGAAGGTTAATGCCCTTCGTGTTTGCAGTGGCAATGAAGGAATTGAAGGAACTTACAAGGCAGAAACCTCGTGCTCTGACCCACCTCCTAGGCCGACCATGGCAGGCATTTCTTATAAAACAAGTAATTCTAGACTAGAACAAAATGTCGGAACTGTGACCATAAAGGCAACACATGGAGGACATACTATTCGGTTTCAGCTCCCACATTTATCAAGAAAGTCAGATTTAGTGGAGAAGGTGACAACGAGGTTGTTGTTGAATGAAGGATCTTTTAATATCCAGTATCAGGATGAAGAGAATGAGTGGGTTTTAATTTCCTGTGATGAGGATCTGGAGGAATGCATTGGTATTTGGAAGGGAAAGAGTATAATCAAAATGTTGGTCCAGCCAATTACCAACCAAGCACCTTGA

Network for GWHGAAZE010379

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	514	561	5.90E-14
PF00564.25	PB1	611	690	1.70E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.363
	SRR3591706	second leaf	0.774
	SRR3591707	mature leaf	0.668
	SRR3591708	Shoot apex	0.869
	SRR3591709	Stem	2.234
	SRR3591710	White floral bud	0.009
	SRR3591711	White flower	0.045
	SRR3591712	Green floral bud	0.091
	SRR3591713	Yellow flower	0.035
SRP173429	SRR8316895	Juvenile bud stage	6.072
	SRR8316896	Juvenile bud stage	4.974
	SRR8316897	Juvenile bud stage	11.415
	SRR8316894	Third green stage	1.412
	SRR8316900	Third green stage	3.307
	SRR8316901	Third green stage	2.607
	SRR8316898	Complete white stage	0.517
	SRR8316899	Complete white stage	6.366
	SRR8316903	Complete white stage	1.013
	SRR8316902	Silver flowering stage	0.754
	SRR8316904	Silver flowering stage	0.854
	SRR8316905	Silver flowering stage	0.407
	SRR8316906	Gold flowering stage	1.672
	SRR8316907	Gold flowering stage	1.864
	SRR8316908	Gold flowering stage	4.744
SRP132670	SRR6706286	Control	2.582
	SRR6706287	Light intensity 50%	2.347
	SRR6706288	Light intensity 20%	1.923
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.460
	CNS0095593	Slightly white alabastrum(diploid) 2	3.696
	CNS0095594	Slightly white alabastrum(diploid) 3	5.843
	CNS0095595	Whole white alabastrum(diploid) 2	1.933
	CNS0095596	Whole white alabastrum(diploid) 3	0.924
	CNS0095597	Whole white alabastrum(diploid) 4	2.086
	CNS0095598	Silvery flower (diploied) 1	5.803
	CNS0095599	Silvery flower (diploied) 2	7.232
	CNS0095600	Silvery flower (diploied) 3	3.967
	CNS0095601	Golden flower (diploid) 1	11.036
	CNS0095602	Golden flower (diploid) 2	9.033
	CNS0095603	Golden flower (diploid) 3	8.534
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.654
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.670
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.946
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.841
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.102
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.297
	CNS0095610	Silvery flower (tetraploid) 1	2.023
	CNS0095611	Silvery flower (tetraploid) 2	2.636
	CNS0095612	Silvery flower (tetraploid) 3	1.717
	CNS0095613	Golden flower (tetraploid) 1	1.051
	CNS0095614	Golden flower (tetraploid) 2	2.597
	CNS0095615	Golden flower (tetraploid) 3	0.548
CRA001975	CRR073297	Stem 1	1.686
	CRR073298	Stem 2	1.576
	CRR073299	Stem 3	0.815
	CRR073300	Leaf 1	1.109
	CRR073301	Leaf 2	2.014
	CRR073302	Leaf 3	0.581
	CRR073303	Juvenile bud 1	0.536
	CRR073304	Juvenile bud 2	0.394
	CRR073305	Juvenile bud 3	1.000
	CRR073306	Third green 1	0.340
	CRR073307	Third green 2	0.275
	CRR073308	Third green 3	0.289
	CRR073309	Second white 1	0.375
	CRR073310	Second white 2	0.324
	CRR073311	Second white 3	0.363
	CRR073312	Silver flowering 1	0.484
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.048
	CRR073315	Gold flowering 1	3.643
	CRR073316	Gold flowering 2	7.515
	CRR073317	Gold flowering 3	1.194
	CRR073318	Tawny withering 1	4.577
	CRR073319	Tawny withering 2	4.682
	CRR073320	Tawny withering 3	2.838