Gene detail

Detail information of GWHGAAZE010383

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601280.1	1.71894E-45	PREDICTED: protein NLP7-like isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q5NB82\|NLP3_ORYSJ	8E-39	Protein NLP3
trEMBL	tr\|M1AWJ6\|M1AWJ6_SOLTU	3E-49	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400031941}
TAIR10	AT1G64530.1	8E-25	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	5412520	5425393	-
GWHAAZE00000003	mRNA	5412520	5425393	-
GWHAAZE00000003	exon	5425267	5425393	-
GWHAAZE00000003	exon	5415773	5416317	-
GWHAAZE00000003	exon	5414370	5414408	-
GWHAAZE00000003	exon	5413175	5414273	-
GWHAAZE00000003	exon	5412520	5413058	-
GWHAAZE00000003	CDS	5425267	5425393	-
GWHAAZE00000003	CDS	5415773	5416317	-
GWHAAZE00000003	CDS	5414370	5414408	-
GWHAAZE00000003	CDS	5413175	5414273	-
GWHAAZE00000003	CDS	5412520	5413058	-

Transcript Sequence
>GWHTAAZE010395 ATGGGCTGTGACGACGATAAATACCGAACAGTGACGACGACAAATGCTGGACAATGTCGGGGCGAAGACATTAAAGAAGTGGAAGATGGTGAGAGATGGAAGAAGGAGATGATAATGGTGGTTGCGTTTGGTGATCTGAACAACAATCGGACGAATGTTCAAGAGTACTTAAAATCTTTACTTTGCAACGTTGACGATGATGGGAACTTTCTTCTTATTCAATTTTGGGCTCCTACTACTATTATTACTACTTGTTCTCAAAAAACAAAAGAAAAAAAAAATACTACTATTACTAGTAGTACGATTGGGGAAGGCTATGTGTTTAAAACATTAAATCAACCTTTTGCTCTTTACAAAATTGAGAGAGGAATTTGTGAGTACAGGAAGCATTGTACAAGCCTTGAATTTAATGTCTTCCGAGATGAAAAAAAATATGGATATGACTTTGGTAGTATATTTGGGCGAGTCGTCAGGAATAGACAAGCATATTCCGTTCAAGACGATCGGCTGGCTGATTTTGTTCCCAAAAAATATGGCCATAAACTGACGTCTTTGTTTCTGCCCCTCTTCAAACCTTCCGGCCGGTGTTGTTCTGGTGTACTTGAGCTCATAGGTTCTTACAATGGTTTTTTGCCTTCTGAAATGCTTAACGTAGCCAAAGTTATATTAAAGGAAGCAAACTTTATGAATCCCCCCTCTCTCGAGTTGCAAGAAAGTACAGAAATAGAAGAGATCAATAAGGCATTGCAAGTGGTGTGTACAACACACCAGTTACCCCTTGCTCAGATCTGGATTCCATGCTGTCATAGCACTGCCATGGCCAATGTTGTTAGCCCGGGCGAGCACTGCCATTTCCCTTATTTAAGCTGCAGCAGTAAATTTTCATCATCAATATCTCGGAATGGTGACGCATATTTCCTTTCTGACATGGAAGAGTTCAACAGAATGTGCCAGGATCATAATTTTACGACAGGTCTGGGTATTGTTGGTATGGCACTTTTATACCATATGCCTTGCTTCTGCAGGGATGTAAGCCAACTCCCCAAGGCTGCTGATTACCCCTTTTCCGATGAAGATTTCTTGATTAGTTTGGGTGGCCGTTGTGCAATTTTGTTACAAAGTACTCGCACTAAGAATCATGATTATGTGCTACAGTTCTTATTTCCCCCTTGGAACGCTTTCCCTGGAGTTATGCAGACATGCTTGGAGTTGCTATTGGCAACAGTGAAGAAGCAGCTTCCAGGTTTTAAAATTAGTTCAGTGGGAGATGAATCGTGTGTTGAAGTATGTGAAATTTCTGTGAATGATGATGAACCTGATTCTGTTATAATATCCCAAACTTTTAGTGTTAAACCCATACCTGAATCCTTTGCAAATGGAAAGGAAACGGTGCAGAACAAAGTGGTAGGTGAAACTGTTATAGACAATGGATCAAATATTCTTGGTTTGGAACAAAACGGCGTAGTTGTTTGTCATTCAGAGAAAACAGGTGGAGAGGAATTGTTTGCTGAAGCTGCTACGAATGATGAAATAAGGCTTCCACCCATGCCTGAATCCTTGCGAAATGAAAATGAACTGGTGCAGCAACTATCAGATGACGAGCCAACCATGGAAGAAGCTGTTAGAAAGAATGAATTGAATGTTGGGATTGTAAAGCAAACCAATGCGGCCGTTACATCTTCAGAGAGAATATTCAGCAGAGCAGAGGCATCGGAGAGAGAATATAGAACAAGTGACATTACAATAAGTTTCGAGGATCTCAGCAAACATTTTGGAAAGAAGCTTGATGATGCTGCACAGATACTTGGGGTACAGTGGGTGTTAGCCACTGAAGAGTTTTCTTTTATGGATTCTTCTTCTGTTGCAGTTAGTAGATCTACAATGAAGCGTGTGTGCAGACGTCATAATATCAACAAGTGGCCAGCTCCGAAAAGAAGGAAGGTTAATGCCCTTCGTGTTTGCAGTGGCAATGAAGGAATTGAAGGAACTTACAAGGCAGAAACCTCGTGTTCTGACCCACCTCCTAGGCCTGCCACGGCAGGTATTTCTTACAAAGCAAGTAATTCTAGACAAGAACAAGATGTCGGAACCGTGACCATAAAGGCAACACATGGAGGACATACTATTCGGTTTCAGCTGCCATATTTATCAAGAAAGTCGAATTTAGTGGAGAAGGTGACAACGAGGCTGTCGTTGAATGAAGGATCTTTTAATATCCAATATCAGGATGAAGAGAATGAGTGGGTTTTAATTGCCTGTGATGAGGATCTGGAGGAATGCATTGGTATTTGGAAGGGAAAGAGTATAATCAAAATGTTGGTCCAGCCAATTGCCAATCAAGCACCTTGA

Network for GWHGAAZE010383

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	581	647	1.20E-13
PF00564.25	PB1	697	776	1.10E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.645
	SRR3591706	second leaf	0.432
	SRR3591707	mature leaf	0.373
	SRR3591708	Shoot apex	0.271
	SRR3591709	Stem	1.521
	SRR3591710	White floral bud	1.333
	SRR3591711	White flower	1.925
	SRR3591712	Green floral bud	1.682
	SRR3591713	Yellow flower	0.888
SRP173429	SRR8316895	Juvenile bud stage	0.533
	SRR8316896	Juvenile bud stage	1.367
	SRR8316897	Juvenile bud stage	1.079
	SRR8316894	Third green stage	0.437
	SRR8316900	Third green stage	0.740
	SRR8316901	Third green stage	1.096
	SRR8316898	Complete white stage	0.199
	SRR8316899	Complete white stage	3.559
	SRR8316903	Complete white stage	0.289
	SRR8316902	Silver flowering stage	0.151
	SRR8316904	Silver flowering stage	0.555
	SRR8316905	Silver flowering stage	0.127
	SRR8316906	Gold flowering stage	0.940
	SRR8316907	Gold flowering stage	0.158
	SRR8316908	Gold flowering stage	0.918
SRP132670	SRR6706286	Control	1.513
	SRR6706287	Light intensity 50%	1.254
	SRR6706288	Light intensity 20%	0.901
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.509
	CNS0095593	Slightly white alabastrum(diploid) 2	1.344
	CNS0095594	Slightly white alabastrum(diploid) 3	1.800
	CNS0095595	Whole white alabastrum(diploid) 2	0.904
	CNS0095596	Whole white alabastrum(diploid) 3	0.356
	CNS0095597	Whole white alabastrum(diploid) 4	1.348
	CNS0095598	Silvery flower (diploied) 1	2.975
	CNS0095599	Silvery flower (diploied) 2	1.894
	CNS0095600	Silvery flower (diploied) 3	0.446
	CNS0095601	Golden flower (diploid) 1	2.827
	CNS0095602	Golden flower (diploid) 2	1.529
	CNS0095603	Golden flower (diploid) 3	1.262
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.631
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.517
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.171
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.427
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.249
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.360
	CNS0095610	Silvery flower (tetraploid) 1	0.595
	CNS0095611	Silvery flower (tetraploid) 2	0.730
	CNS0095612	Silvery flower (tetraploid) 3	0.601
	CNS0095613	Golden flower (tetraploid) 1	0.408
	CNS0095614	Golden flower (tetraploid) 2	0.421
	CNS0095615	Golden flower (tetraploid) 3	0.382
CRA001975	CRR073297	Stem 1	0.749
	CRR073298	Stem 2	0.669
	CRR073299	Stem 3	0.339
	CRR073300	Leaf 1	0.860
	CRR073301	Leaf 2	1.306
	CRR073302	Leaf 3	0.779
	CRR073303	Juvenile bud 1	0.439
	CRR073304	Juvenile bud 2	0.214
	CRR073305	Juvenile bud 3	0.455
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.034
	CRR073308	Third green 3	0.090
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.026
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.081
	CRR073313	Silver flowering 2	0.049
	CRR073314	Silver flowering 3	0.138
	CRR073315	Gold flowering 1	3.450
	CRR073316	Gold flowering 2	5.783
	CRR073317	Gold flowering 3	0.495
	CRR073318	Tawny withering 1	4.602
	CRR073319	Tawny withering 2	2.738
	CRR073320	Tawny withering 3	5.728