Gene detail

Detail information of GWHGAAZE010384

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601226.1	5.12635E-42	PREDICTED: uncharacterized protein LOC104096544 [Nicotiana tomentosiformis]
trEMBL	tr\|D7TR92\|D7TR92_VITVI	6E-42	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33015.3}
TAIR10	AT3G26360.1	5E-25	Ribosomal protein S21 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	5438750	5442942	-
GWHAAZE00000003	mRNA	5438750	5442942	-
GWHAAZE00000003	exon	5438750	5438824	-
GWHAAZE00000003	exon	5438926	5439415	-
GWHAAZE00000003	exon	5442620	5442942	-
GWHAAZE00000003	CDS	5442620	5442942	-
GWHAAZE00000003	CDS	5438926	5439415	-
GWHAAZE00000003	CDS	5438750	5438824	-

Transcript Sequence
>GWHTAAZE010396 ATGATCGCAATGGTGAGGCGAGTATCGTCTTCTATATTCAGAGCCCCAGCCCCGAATACTGGATTGTTGAAATCAGTTAGTTGGGAGGTTCAACAATGGAGAGGGATAAGGGTGAAGGTGATAAACAACAACTTGGAGCAGGCGCTGGTGTTTATGCAGAGAAAGATGCAATCAAGCGGCATCGAACGGCTGATTAAGAGGGAGCAGATTCACCACATTAAGAACTCTGAAAAGAGGGTTATCGCTCGTAAGAACCTTGAGGCCAAGTTACGATCCCAAGACCTTGCTCGCAAACTTAAGTCCATCCTCATCAAGAAAGTCAGTACGGTAGATCCAACGAAATTGATTTGCGATGGGAAGACGCAAGAAAAGGCTGAAGACAATCTAGATGCAGATGATTTAGAGTACGAGTCGTCATCTTTCGCGGAGGATGTATCATCTACTGGGACGATTGTGGAAGAATCTCAAGAGGAGATATCTAGAGATTTTTTGTATAGCCATTTTAATCCAGAGGAACAGTCTGAGAAGGCCATCATAGAAGTTATACAAGGACATGCTACGGTTAATGCAATGTCGCCGGTTGTTCTTGGCAAGCATGGGGGCACCTTGCAAGATCATCCGCCTTTGTCTCTGAAGGAAATTACAACTGGGGATTATGAAACAGCAAACAAGTTCCATGAAGAGGAAGAAGTGGATGCAGTATCACAGAGGGGTGAAGAGGATGGGATTAGGAAGGACACTAGATCCAGAGGCAGGAATACGAGAAGAATGAGTAATTTAACAAAATTTAAATGGGTGCAGAGACCAAGTCAAGGAAGCTGTGAGTTCATCAGATCAATTGGAATCGGAAAGCAGCGACACATCATTGAAGGTTTCAATCAGAGATAA

Network for GWHGAAZE010384

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01165.21	Ribosomal_S21	38	90	2.30E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02970	RP-S21, MRPS21, rpsU	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.580
	SRR3591706	second leaf	1.200
	SRR3591707	mature leaf	1.483
	SRR3591708	Shoot apex	3.327
	SRR3591709	Stem	2.859
	SRR3591710	White floral bud	10.560
	SRR3591711	White flower	12.212
	SRR3591712	Green floral bud	17.009
	SRR3591713	Yellow flower	7.911
SRP173429	SRR8316895	Juvenile bud stage	5.683
	SRR8316896	Juvenile bud stage	7.995
	SRR8316897	Juvenile bud stage	6.570
	SRR8316894	Third green stage	3.477
	SRR8316900	Third green stage	8.993
	SRR8316901	Third green stage	7.150
	SRR8316898	Complete white stage	1.741
	SRR8316899	Complete white stage	7.679
	SRR8316903	Complete white stage	4.064
	SRR8316902	Silver flowering stage	1.872
	SRR8316904	Silver flowering stage	2.621
	SRR8316905	Silver flowering stage	1.357
	SRR8316906	Gold flowering stage	4.644
	SRR8316907	Gold flowering stage	3.653
	SRR8316908	Gold flowering stage	7.413
SRP132670	SRR6706286	Control	10.482
	SRR6706287	Light intensity 50%	11.258
	SRR6706288	Light intensity 20%	11.958
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.293
	CNS0095593	Slightly white alabastrum(diploid) 2	7.816
	CNS0095594	Slightly white alabastrum(diploid) 3	6.292
	CNS0095595	Whole white alabastrum(diploid) 2	6.742
	CNS0095596	Whole white alabastrum(diploid) 3	7.321
	CNS0095597	Whole white alabastrum(diploid) 4	7.567
	CNS0095598	Silvery flower (diploied) 1	4.930
	CNS0095599	Silvery flower (diploied) 2	5.031
	CNS0095600	Silvery flower (diploied) 3	6.109
	CNS0095601	Golden flower (diploid) 1	4.519
	CNS0095602	Golden flower (diploid) 2	5.193
	CNS0095603	Golden flower (diploid) 3	5.310
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.797
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.997
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.743
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.668
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.496
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.029
	CNS0095610	Silvery flower (tetraploid) 1	16.619
	CNS0095611	Silvery flower (tetraploid) 2	13.219
	CNS0095612	Silvery flower (tetraploid) 3	12.682
	CNS0095613	Golden flower (tetraploid) 1	9.535
	CNS0095614	Golden flower (tetraploid) 2	13.780
	CNS0095615	Golden flower (tetraploid) 3	10.947
CRA001975	CRR073297	Stem 1	5.107
	CRR073298	Stem 2	5.148
	CRR073299	Stem 3	7.050
	CRR073300	Leaf 1	6.600
	CRR073301	Leaf 2	5.964
	CRR073302	Leaf 3	8.527
	CRR073303	Juvenile bud 1	9.111
	CRR073304	Juvenile bud 2	5.215
	CRR073305	Juvenile bud 3	5.986
	CRR073306	Third green 1	3.142
	CRR073307	Third green 2	4.048
	CRR073308	Third green 3	3.718
	CRR073309	Second white 1	3.805
	CRR073310	Second white 2	2.692
	CRR073311	Second white 3	2.803
	CRR073312	Silver flowering 1	2.311
	CRR073313	Silver flowering 2	2.597
	CRR073314	Silver flowering 3	2.806
	CRR073315	Gold flowering 1	3.513
	CRR073316	Gold flowering 2	1.893
	CRR073317	Gold flowering 3	2.126
	CRR073318	Tawny withering 1	6.262
	CRR073319	Tawny withering 2	3.843
	CRR073320	Tawny withering 3	4.107