Detail information of GWHGAAZE010389


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006372828.11.45135E-48hypothetical protein POPTR_0017s05450g [Populus trichocarpa]
Swissprottr|A2YN56|SHR1_ORYSI2E-21Protein SHORT-ROOT 1
trEMBLtr|U5FI43|U5FI43_POPTR5E-49Uncharacterized protein {ECO:0000313|EMBL:ERP50625.1}
TAIR10AT4G37650.17E-18GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene55494355549966-
GWHAAZE00000003mRNA55494355549966-
GWHAAZE00000003exon55494355549663-
GWHAAZE00000003exon55497435549966-
GWHAAZE00000003CDS55497435549966-
GWHAAZE00000003CDS55494355549663-
Transcript Sequence

Network for GWHGAAZE010389

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS17702.20E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.515
SRR3591706second leaf0.296
SRR3591707mature leaf0.000
SRR3591708Shoot apex1.277
SRR3591709Stem0.919
SRR3591710White floral bud0.791
SRR3591711White flower0.036
SRR3591712Green floral bud2.201
SRR3591713Yellow flower0.088
SRP173429 SRR8316895Juvenile bud stage 0.444
SRR8316896Juvenile bud stage 0.454
SRR8316897Juvenile bud stage 0.142
SRR8316894Third green stage 0.199
SRR8316900Third green stage 0.582
SRR8316901Third green stage 0.559
SRR8316898Complete white stage 0.118
SRR8316899Complete white stage 1.844
SRR8316903Complete white stage 0.312
SRR8316902Silver flowering stage0.251
SRR8316904Silver flowering stage0.007
SRR8316905Silver flowering stage0.113
SRR8316906Gold flowering stage 0.135
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.042
SRR6706287Light intensity 50%0.123
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.149
CNS0095593Slightly white alabastrum(diploid) 20.482
CNS0095594Slightly white alabastrum(diploid) 30.244
CNS0095595Whole white alabastrum(diploid) 20.297
CNS0095596Whole white alabastrum(diploid) 30.185
CNS0095597Whole white alabastrum(diploid) 40.281
CNS0095598Silvery flower (diploied) 10.008
CNS0095599Silvery flower (diploied) 20.148
CNS0095600Silvery flower (diploied) 30.026
CNS0095601Golden flower (diploid) 10.204
CNS0095602Golden flower (diploid) 20.002
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.279
CNS0095605Slightly white alabastrum(tetraploid) 20.112
CNS0095606Slightly white alabastrum(tetraploid) 30.916
CNS0095607Whole white alabastrum(tetraploid) 10.241
CNS0095608Whole white alabastrum(tetraploid) 20.191
CNS0095609Whole white alabastrum(tetraploid) 30.078
CNS0095610Silvery flower (tetraploid) 10.060
CNS0095611Silvery flower (tetraploid) 20.067
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.667
CRR073298Stem 21.021
CRR073299Stem 31.588
CRR073300Leaf 10.810
CRR073301Leaf 20.893
CRR073302Leaf 31.141
CRR073303Juvenile bud 10.859
CRR073304Juvenile bud 20.041
CRR073305Juvenile bud 31.989
CRR073306Third green 10.217
CRR073307Third green 20.024
CRR073308Third green 30.000
CRR073309Second white 10.106
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.047
CRR073318Tawny withering 10.144
CRR073319Tawny withering 20.049
CRR073320Tawny withering 30.091