Detail information of GWHGAAZE010390


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007033876.13.2768E-119GRAS family transcription factor [Theobroma cacao]
Swissprottr|Q9SZF7|SHR_ARATH8E-76Protein SHORT-ROOT
trEMBLtr|A0A061EK79|A0A061EK79_THECC1E-119GRAS family transcription factor {ECO:0000313|EMBL:EOY04802.1}
TAIR10AT4G37650.16E-63GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene55500545550647-
GWHAAZE00000003mRNA55500545550647-
GWHAAZE00000003exon55500545550647-
GWHAAZE00000003CDS55500545550647-
Transcript Sequence

Network for GWHGAAZE010390

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS321961.80E-44
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.601
SRR3591706second leaf2.577
SRR3591707mature leaf0.674
SRR3591708Shoot apex11.353
SRR3591709Stem11.965
SRR3591710White floral bud3.305
SRR3591711White flower0.736
SRR3591712Green floral bud8.597
SRR3591713Yellow flower0.105
SRP173429 SRR8316895Juvenile bud stage 2.598
SRR8316896Juvenile bud stage 3.440
SRR8316897Juvenile bud stage 1.568
SRR8316894Third green stage 2.059
SRR8316900Third green stage 3.057
SRR8316901Third green stage 3.359
SRR8316898Complete white stage 0.946
SRR8316899Complete white stage 13.187
SRR8316903Complete white stage 2.903
SRR8316902Silver flowering stage0.194
SRR8316904Silver flowering stage0.812
SRR8316905Silver flowering stage0.742
SRR8316906Gold flowering stage 0.300
SRR8316907Gold flowering stage 0.611
SRR8316908Gold flowering stage 0.394
SRP132670SRR6706286Control3.373
SRR6706287Light intensity 50%3.724
SRR6706288Light intensity 20%4.233
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.967
CNS0095593Slightly white alabastrum(diploid) 20.862
CNS0095594Slightly white alabastrum(diploid) 30.591
CNS0095595Whole white alabastrum(diploid) 21.725
CNS0095596Whole white alabastrum(diploid) 31.420
CNS0095597Whole white alabastrum(diploid) 41.543
CNS0095598Silvery flower (diploied) 10.610
CNS0095599Silvery flower (diploied) 20.997
CNS0095600Silvery flower (diploied) 31.042
CNS0095601Golden flower (diploid) 10.156
CNS0095602Golden flower (diploid) 20.284
CNS0095603Golden flower (diploid) 30.571
CNS0095604Slightly white alabastrum(tetraploid) 15.960
CNS0095605Slightly white alabastrum(tetraploid) 22.425
CNS0095606Slightly white alabastrum(tetraploid) 320.884
CNS0095607Whole white alabastrum(tetraploid) 16.213
CNS0095608Whole white alabastrum(tetraploid) 23.380
CNS0095609Whole white alabastrum(tetraploid) 32.532
CNS0095610Silvery flower (tetraploid) 11.099
CNS0095611Silvery flower (tetraploid) 20.541
CNS0095612Silvery flower (tetraploid) 30.864
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.284
CNS0095615Golden flower (tetraploid) 30.050
CRA001975CRR073297Stem 19.913
CRR073298Stem 27.620
CRR073299Stem 312.912
CRR073300Leaf 18.966
CRR073301Leaf 29.018
CRR073302Leaf 39.251
CRR073303Juvenile bud 18.882
CRR073304Juvenile bud 23.228
CRR073305Juvenile bud 321.316
CRR073306Third green 11.157
CRR073307Third green 21.059
CRR073308Third green 32.612
CRR073309Second white 10.245
CRR073310Second white 20.219
CRR073311Second white 30.179
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.090
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.330
CRR073316Gold flowering 20.088
CRR073317Gold flowering 30.249
CRR073318Tawny withering 11.930
CRR073319Tawny withering 20.052
CRR073320Tawny withering 32.870