Gene detail

Detail information of GWHGAAZE010391

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010644832.1	8.322E-50	PREDICTED: F-box/LRR-repeat protein At4g14103-like [Vitis vinifera]
Swissprot	tr\|Q9LX46\|FBL68_ARATH	3E-37	F-box/LRR-repeat protein At3g59250
trEMBL	tr\|A5BLF6\|A5BLF6_VITVI	6E-49	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN74740.1}
TAIR10	AT3G59250.1	8E-34	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	5599876	5602170	+
GWHAAZE00000003	mRNA	5599876	5602170	+
GWHAAZE00000003	exon	5599876	5600182	+
GWHAAZE00000003	exon	5600641	5601203	+
GWHAAZE00000003	exon	5601299	5601442	+
GWHAAZE00000003	exon	5601667	5602170	+
GWHAAZE00000003	CDS	5599876	5600182	+
GWHAAZE00000003	CDS	5600641	5601203	+
GWHAAZE00000003	CDS	5601299	5601442	+
GWHAAZE00000003	CDS	5601667	5601960	+
GWHAAZE00000003	three_prime_UTR	5601961	5602170	+

Transcript Sequence
>GWHTAAZE010403 ATGGGTCCAAACCCTAAATCCACCAAGCTTCTAGTACAACAACAAACCCTAACCCTAGATGATAATAATCCCACCGGAATTGACAGAATCAGCAATTTGCCCGACGAGATTCTGTGCCATATACTCTCATTTCTCCCCACTAAATACGCTGTTGGTACTTCAGTTCTGTCCACACGATGGAAGAATCTCTTCCCTTTCATCCCCAAACTCTCACTCAACTTCGATGATTCTTTACTCTTACATCCCCACAAAGAAAACCCTAATTTGATCCCTAATTTTGTTAAATTTATGTACAATGTGATGAACCAACTCACTGTTCATGTTGAAAATGAGGATAGGGATTTTATTCGGTTCCCTGAACGGCTTTTTAAATGCTTGAGTGTAATGTGGGTTACTATCGGCGGGCGTTTCTTTTTTGATGTTCCCACTATGGTTCTTTTGCCGAATATAAGGAGCATGTTCTTGGATTGTGTAATGTTTCCCAACGGTGAAGCGGTTGAACGTCTTATTACTGGGTGCTTTTTCATTGAAGAATTTTGTTTAGAGAGATGCGATTTTCAAGATCTTGATGTTCTTAAGATATCAAGTACTACGCTTAAGCTTTTGGTGATAATTAATTGTAAGTGGGATGGGAAGTATGAAGTTGTGCTTGATGTTCCGAATCTTGAGCTCTTTCATTACCAGGAGGATGCTATTGCTTATGACTATACAGTCAAGAATATGGGCTGCGTTCGTAAAGCGCACATAGACATTGGAATTAGTTGGGATCAAGGACTAGAGGATGGACCTCGTTATGAGGCTAATGCAGTTGGGCTTGTTGCGGTTTGCTCGAATCTTGAAACACTATATTTATCACAGAATTCATTGCATGCCATCCAATGGTACTGGGGATTCGTAAGACCCTTTTCTAATTTGACTACCTTGAAGCTTGGTCTTATTGACGACTGTGGTTGGCTTTTTTTGGCACACTTGCTCAATAGTATGCCCAACCTTGAAGTTCTTGAATTCACTTGGGGGTTTATGGAGTACGAAGACTTTCCAGATTTTGTATCTCATGTGGCCAAACGTGAGCCTCAATGTCTGTCATCCCGTCTTGACAAAGTTAAGATTGAAGAATTCACTGGGGAAGAAGATGAGCTCAGTGTGGTAGAATTTTTCTTAAAGAGTGCAAAAGTTCTGAGGGAGCTGGAAATTGTCTCTGATTTGTCTTTGGAAGAGCAGTTGAACATTAGCAAAAAAGTATCATTGTTTCCTAAATGCTCAGCTGCCTGTGAGATTGTGTTTACAAGTACTGAAGAAAGAAAGTAAGATTTATAAAATTTTCCAGTGTGATGAATGGACAGTGAAAATATTAATGAATTGTTTGATATATTTCATCTATATTGAGTGAGTACATTCGCCATTTTCTTGATTGTTTCTTGGATCTATCTTTGTTCTAGTTTTCACCGCTGTGATCCATACTGATGGGAACCATCATGTTTATCATCAAATTTTCCTTCCGATGTCTTTGTTGGAGTA

Network for GWHGAAZE010391

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	29	63	3.00E-08
PF07723.14	LRR_2	151	173	5.90E-05
PF08387.11	FBD	358	398	2.40E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.439
	SRR3591706	second leaf	1.654
	SRR3591707	mature leaf	1.428
	SRR3591708	Shoot apex	4.794
	SRR3591709	Stem	3.518
	SRR3591710	White floral bud	1.624
	SRR3591711	White flower	2.038
	SRR3591712	Green floral bud	1.678
	SRR3591713	Yellow flower	1.335
SRP173429	SRR8316895	Juvenile bud stage	0.354
	SRR8316896	Juvenile bud stage	0.853
	SRR8316897	Juvenile bud stage	0.177
	SRR8316894	Third green stage	0.366
	SRR8316900	Third green stage	0.442
	SRR8316901	Third green stage	0.659
	SRR8316898	Complete white stage	0.306
	SRR8316899	Complete white stage	1.998
	SRR8316903	Complete white stage	0.852
	SRR8316902	Silver flowering stage	0.274
	SRR8316904	Silver flowering stage	0.159
	SRR8316905	Silver flowering stage	0.254
	SRR8316906	Gold flowering stage	0.255
	SRR8316907	Gold flowering stage	0.180
	SRR8316908	Gold flowering stage	0.133
SRP132670	SRR6706286	Control	0.063
	SRR6706287	Light intensity 50%	0.231
	SRR6706288	Light intensity 20%	0.153
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.601
	CNS0095593	Slightly white alabastrum(diploid) 2	1.396
	CNS0095594	Slightly white alabastrum(diploid) 3	1.246
	CNS0095595	Whole white alabastrum(diploid) 2	1.040
	CNS0095596	Whole white alabastrum(diploid) 3	0.451
	CNS0095597	Whole white alabastrum(diploid) 4	1.310
	CNS0095598	Silvery flower (diploied) 1	1.748
	CNS0095599	Silvery flower (diploied) 2	2.828
	CNS0095600	Silvery flower (diploied) 3	0.764
	CNS0095601	Golden flower (diploid) 1	1.155
	CNS0095602	Golden flower (diploid) 2	1.007
	CNS0095603	Golden flower (diploid) 3	1.168
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.218
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.278
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.903
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.163
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.274
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.488
	CNS0095610	Silvery flower (tetraploid) 1	3.529
	CNS0095611	Silvery flower (tetraploid) 2	3.101
	CNS0095612	Silvery flower (tetraploid) 3	4.125
	CNS0095613	Golden flower (tetraploid) 1	1.079
	CNS0095614	Golden flower (tetraploid) 2	1.804
	CNS0095615	Golden flower (tetraploid) 3	2.064
CRA001975	CRR073297	Stem 1	0.475
	CRR073298	Stem 2	0.410
	CRR073299	Stem 3	0.064
	CRR073300	Leaf 1	0.336
	CRR073301	Leaf 2	0.539
	CRR073302	Leaf 3	0.100
	CRR073303	Juvenile bud 1	0.081
	CRR073304	Juvenile bud 2	0.287
	CRR073305	Juvenile bud 3	0.064
	CRR073306	Third green 1	0.083
	CRR073307	Third green 2	0.076
	CRR073308	Third green 3	0.103
	CRR073309	Second white 1	0.118
	CRR073310	Second white 2	0.133
	CRR073311	Second white 3	0.188
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.030
	CRR073316	Gold flowering 2	0.125
	CRR073317	Gold flowering 3	0.132
	CRR073318	Tawny withering 1	0.031
	CRR073319	Tawny withering 2	0.068
	CRR073320	Tawny withering 3	0.113