Gene detail

Detail information of GWHGAAZE010392

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006476342.1	2.89572E-40	PREDICTED: protein NLP7-like [Citrus sinensis]
Swissprot	tr\|Q5NB82\|NLP3_ORYSJ	6E-39	Protein NLP3
trEMBL	tr\|A0A067GMR4\|A0A067GMR4_CITSI	1E-40	Uncharacterized protein {ECO:0000313\|EMBL:KDO76616.1}
TAIR10	AT1G64530.1	3E-33	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	5604896	5607516	-
GWHAAZE00000003	mRNA	5604896	5607516	-
GWHAAZE00000003	exon	5604896	5604958	-
GWHAAZE00000003	exon	5605316	5605623	-
GWHAAZE00000003	exon	5605744	5606839	-
GWHAAZE00000003	exon	5606949	5607004	-
GWHAAZE00000003	exon	5607468	5607516	-
GWHAAZE00000003	CDS	5607468	5607516	-
GWHAAZE00000003	CDS	5606949	5607004	-
GWHAAZE00000003	CDS	5605744	5606839	-
GWHAAZE00000003	CDS	5605316	5605623	-
GWHAAZE00000003	CDS	5604896	5604958	-

Transcript Sequence
>GWHTAAZE010404 ATGCAGCATAATGAGATCTATGTACTTGAGCTCATAGGTTATATTGAAGCACTTTCCTTGCAGGAAGCAAACTTGATACATCCATCTCCTTTCGAGTTGCTGCTAGAAAGTACAGAAATAGAAGAGATCAATAAGGTGTTGCTAGGAGTGTGTACTACAGACCAGTTACCCCTTGCTCAGATCTGGATTCCATGCTGTACTAGCACTACCATGGCCTATGTTGATAGGCCGGGCCAGCGCTGCCATTCCCCTTGTTTAAGTTGCAGCAATAAATTTTCATCATCAATATCTCAGAATGGTGATAACCATTATCTGATGCAAGGCTTCAACATTGAGAGTTCCCGTTCTTATTTCAGAAAGGGTGAGGGAATTGTTGGTAAGGCACTTATACACCATAAGCCTTGCTTCTGCAGGGATGTAACCCAACTCCCCAAGGATGAGTACCCCTTATCCAATGTTGCACGCTTGTCTGGGTTAACTGGCTGTTGTGCAATTTGGGTGCACAGTACTCTCACTATGAATGATGATTATGTGCTGGAGTTTTTCTTTCCCCCTTGGAACACAGTTTCTGGAGATCCACAGAGATACTTGGAGTTGCAATTGGCAACAGTGAAGAAGCAACTTCCAGCTTTTAAAATTAGTTCAGTGGGAGATGAATCATGTGTTCAAGTATGTGAAATTTCTGTGAATGATGATAAACCTAATTCTGTTAGAATATCCCAAACTTTTAATGTTAAACCAGTACCCGGATCCTTTGTAAATGAAAAGGGAACAGTGCAGAACGAAGTAGTAGGTGAAACTGTTAAAGACAATGGATCAAATATTCTTGGTTTGGAAGAAAACAGCATGGTTGTTTGTCATTTAGAGAAAACAGCCGGAGAGAAATTGTTTGTTGAAGCTGCTATGGCTGATGAAATAACCAGAAGGCTTGCACCCATGCCTGAATCCTTGCGAAATGAAAATGAAGTGGTGCAGCAGCTATCAGATGACGAGCCAACCATGGAAGAAGCTGTTAGAAAGAATGAATTGAATGTTGGGATTGTAAAGCAGACCAGTGAGGCTGTTACATCTTCAGAGAGAATATTCAGCAGAGCAGAGGCATCGGAGAGAGAATATAGAACAATTGACACTACATTAAGTCGCGAGGATCTCACAAAACATTTTGGAAAGAAGCTTGACGATGCTGCAAAGATACTTAATGTTAGTAGATCTACAGTGAAGCGTGCGTGCAGACTTCATAATATCAACAAGTGGCCAGTTCTGAAGAGAAAGAAGATTAATGCCCTTCATGTTCACAGTGGCAATGAAGGAATTGAAGGAAGTTACAAGGGAGACTCCTCGTGTTCTGACCCACCTCCTACGGCTGCCACAGCAGGTATTTCTCACAAAACAACTAATTCTAGACAAGAACAAGATGTGGGAACCGTAACCGTAAAGGCAACACATGGAGGTCATACTATTCTGTTTGACCTTCCATTTTTATCGAGAAGGACGGATTTAGTGAAGCAGTTAAGAGTGTTTAATGCAGCAGCTAGTAAGTGCAGAGCTGCAAGCTGTGAAGAACAGCTGTAA

Network for GWHGAAZE010392

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	378	425	5.40E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.082
	SRR3591706	second leaf	0.023
	SRR3591707	mature leaf	0.053
	SRR3591708	Shoot apex	0.076
	SRR3591709	Stem	0.100
	SRR3591710	White floral bud	0.565
	SRR3591711	White flower	0.576
	SRR3591712	Green floral bud	0.080
	SRR3591713	Yellow flower	2.253
SRP173429	SRR8316895	Juvenile bud stage	1.685
	SRR8316896	Juvenile bud stage	3.167
	SRR8316897	Juvenile bud stage	0.854
	SRR8316894	Third green stage	0.607
	SRR8316900	Third green stage	1.858
	SRR8316901	Third green stage	1.781
	SRR8316898	Complete white stage	0.642
	SRR8316899	Complete white stage	0.387
	SRR8316903	Complete white stage	0.361
	SRR8316902	Silver flowering stage	0.305
	SRR8316904	Silver flowering stage	0.788
	SRR8316905	Silver flowering stage	0.484
	SRR8316906	Gold flowering stage	0.957
	SRR8316907	Gold flowering stage	0.416
	SRR8316908	Gold flowering stage	4.192
SRP132670	SRR6706286	Control	0.802
	SRR6706287	Light intensity 50%	0.509
	SRR6706288	Light intensity 20%	0.709
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.523
	CNS0095593	Slightly white alabastrum(diploid) 2	1.331
	CNS0095594	Slightly white alabastrum(diploid) 3	2.806
	CNS0095595	Whole white alabastrum(diploid) 2	2.365
	CNS0095596	Whole white alabastrum(diploid) 3	1.485
	CNS0095597	Whole white alabastrum(diploid) 4	1.787
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.590
	CNS0095601	Golden flower (diploid) 1	0.350
	CNS0095602	Golden flower (diploid) 2	0.916
	CNS0095603	Golden flower (diploid) 3	0.796
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.532
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.642
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.469
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.816
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.462
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.301
	CNS0095610	Silvery flower (tetraploid) 1	1.705
	CNS0095611	Silvery flower (tetraploid) 2	1.835
	CNS0095612	Silvery flower (tetraploid) 3	1.457
	CNS0095613	Golden flower (tetraploid) 1	1.134
	CNS0095614	Golden flower (tetraploid) 2	1.908
	CNS0095615	Golden flower (tetraploid) 3	1.623
CRA001975	CRR073297	Stem 1	1.557
	CRR073298	Stem 2	1.570
	CRR073299	Stem 3	1.395
	CRR073300	Leaf 1	0.870
	CRR073301	Leaf 2	0.953
	CRR073302	Leaf 3	1.190
	CRR073303	Juvenile bud 1	0.966
	CRR073304	Juvenile bud 2	0.263
	CRR073305	Juvenile bud 3	0.214
	CRR073306	Third green 1	0.343
	CRR073307	Third green 2	0.316
	CRR073308	Third green 3	0.312
	CRR073309	Second white 1	0.559
	CRR073310	Second white 2	0.380
	CRR073311	Second white 3	0.721
	CRR073312	Silver flowering 1	0.554
	CRR073313	Silver flowering 2	0.105
	CRR073314	Silver flowering 3	0.245
	CRR073315	Gold flowering 1	0.003
	CRR073316	Gold flowering 2	0.100
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.160
	CRR073319	Tawny withering 2	0.261
	CRR073320	Tawny withering 3	0.142