Gene detail

Detail information of GWHGAAZE010393

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009605048.1	1.66121E-50	PREDICTED: protein NLP6-like isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q5NB82\|NLP3_ORYSJ	5E-31	Protein NLP3
trEMBL	tr\|A0A068V4U1\|A0A068V4U1_COFCA	4E-45	Coffea canephora DH200=94 genomic scaffold, scaffold_102 {ECO:0000313\|EMBL:CDP15666.1}
TAIR10	AT1G64530.1	4E-27	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	5624351	5625948	-
GWHAAZE00000003	mRNA	5624351	5625948	-
GWHAAZE00000003	exon	5624976	5625948	-
GWHAAZE00000003	exon	5624351	5624820	-
GWHAAZE00000003	CDS	5624976	5625948	-
GWHAAZE00000003	CDS	5624351	5624820	-

Transcript Sequence
>GWHTAAZE010405 ATGACACTCCAGTTACCTCTTTCTCAGATCTGGATTCCATGCTGTACTAGCACTGCCATGGCCCATGTTGATAGCCCCGGCGAGTGCTGCCATTCCCCTTATTTATGCTGCATATCATCAATATCTCAGAATGGTGATGCTGAACTCCCTTCTGACATGGAGCGCTTCAGCCGTGTGTGCAAGGTGTGTGATTTTAGGACGGGTCAGGGTATTGTTGGTAAGGCACTTTTAAAACACATGGCTTGCTTCTGTAGGAATGTAACCCAACTCCCCGAGGCCGAGTACCCCTTATCCTACGCTGCATGCAAGTATGGGTTAACTGGCTGTTGTGCAATTTGGTTGCACAGTACTCGCACTAAGAATCATGATTATGTGCTAGAGTTTTTCCTTCCTCCTTGGAACACAATCTCTGGAAATCTGCAGAGATACTTGGAGTTGCTCTTGGCAACAGTGCAGAAGCAACTTCCAGATTTTAAAATTAGTTCAGTGGGAGAGGAATCATGTGTTGAAATTTGTGAAATTTCTGTGAATGATGATGAACCTGATTCTATTACGATATCCCAAATTACTAGTGTTCAACCCGTACCCGAATCCTTTGCAAATGAAAGGGAAACGGTGCAGAACAAAGTGGTATGCGAAACTGTTATAGACAATGGATCAAATATTCTTGGTTTGGAACAAAATGGCATAGTTGTTTGTCATTCTGAGAAAACAGCTGCAGACGAATTGTTTGTTGAAGCTGCTACAAATGATGACAATGACGAGTCAACCATGGAAGAAGCTGTTAGAAAGAATGAATTAAATGTTGGGATTGTAAAGCAAACTAGTGAGGCAGTAACATCTCCAGAGAGAATATTTAGCAGAGCAGAGGCATTGGAGAGAGAATATAGAACAACTGACATTACACTAAGTCGTGAGGATCTCACAAAACATTTTGGAAAGAAGCTTGACGATGCTGCACAGATTCTTGGGGTTAGTAGATCTACAATGAAGCGTGCGTTGAGACTTCATAAAATTGACAAGTGGCCACTTCCGAAGAGAAAGAAGGTTGTTTGCAGTGGCAATGAAAGAATAGAAGGAACTTACATGGGAGACCCCTCGTGTTCTGAACCACCTCCTAGGTCTGCCACAGCAGGTATTTCTCACAAAACAAGTAATTCTAGACAAGAACATGATGTGGGAACCGTGACCATAAAGGCAACACATGGAAATAAGACTTTTCGGTTTAAGCTCCCATTTTCATCAAGAAAGACGGATTTAGTGGATAAATTGACAGCGAGGCTGCCATTGAATGAAGGATCTTTTAATATTCGGTATCAGGATGAAGATAATGAGTGGATTTCAATTGCCTGTGATGAGGACTTGGAGGAGTGTATTGATATTTGGAAGGGAAAGAGTAAAATCAAAATGTTGGTTGAGGCAATTACCAATGAAGCACCTTGA

Network for GWHGAAZE010393

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0070

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	302	350	3.20E-12
PF00564.25	PB1	395	472	2.40E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.184
	SRR3591706	second leaf	1.226
	SRR3591707	mature leaf	1.675
	SRR3591708	Shoot apex	2.335
	SRR3591709	Stem	3.332
	SRR3591710	White floral bud	0.045
	SRR3591711	White flower	0.075
	SRR3591712	Green floral bud	0.037
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.072
	SRR8316896	Juvenile bud stage	0.023
	SRR8316897	Juvenile bud stage	0.424
	SRR8316894	Third green stage	0.134
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.116
	SRR8316898	Complete white stage	0.016
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.290
	SRR8316902	Silver flowering stage	0.129
	SRR8316904	Silver flowering stage	0.095
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.611
	SRR8316907	Gold flowering stage	0.157
	SRR8316908	Gold flowering stage	0.855
SRP132670	SRR6706286	Control	0.149
	SRR6706287	Light intensity 50%	0.053
	SRR6706288	Light intensity 20%	0.067
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.111
	CNS0095593	Slightly white alabastrum(diploid) 2	0.177
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.109
	CNS0095596	Whole white alabastrum(diploid) 3	0.126
	CNS0095597	Whole white alabastrum(diploid) 4	0.097
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.063
	CNS0095600	Silvery flower (diploied) 3	0.013
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.221
	CNS0095603	Golden flower (diploid) 3	0.231
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.869
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.608
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.246
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.888
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.255
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.833
	CNS0095610	Silvery flower (tetraploid) 1	1.056
	CNS0095611	Silvery flower (tetraploid) 2	0.563
	CNS0095612	Silvery flower (tetraploid) 3	1.614
	CNS0095613	Golden flower (tetraploid) 1	0.236
	CNS0095614	Golden flower (tetraploid) 2	0.607
	CNS0095615	Golden flower (tetraploid) 3	0.213
CRA001975	CRR073297	Stem 1	0.032
	CRR073298	Stem 2	0.051
	CRR073299	Stem 3	0.029
	CRR073300	Leaf 1	0.118
	CRR073301	Leaf 2	0.052
	CRR073302	Leaf 3	0.035
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.006
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.360
	CRR073311	Second white 3	0.067
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.344
	CRR073315	Gold flowering 1	0.003
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.317
	CRR073319	Tawny withering 2	0.505
	CRR073320	Tawny withering 3	0.877