Gene detail

Detail information of GWHGAAZE010395

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004245484.1	8.85642E-59	PREDICTED: protein NLP7 isoform X1 [Solanum lycopersicum]
Swissprot	tr\|Q5NB82\|NLP3_ORYSJ	6E-40	Protein NLP3
trEMBL	tr\|K4CPS1\|K4CPS1_SOLLC	3E-59	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc08g082750.2.1}
TAIR10	AT1G64530.1	2E-35	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	5644469	5647398	-
GWHAAZE00000003	mRNA	5644469	5647398	-
GWHAAZE00000003	exon	5647329	5647398	-
GWHAAZE00000003	exon	5646602	5647128	-
GWHAAZE00000003	exon	5645126	5646137	-
GWHAAZE00000003	exon	5644469	5644950	-
GWHAAZE00000003	CDS	5647329	5647398	-
GWHAAZE00000003	CDS	5646602	5647128	-
GWHAAZE00000003	CDS	5645126	5646137	-
GWHAAZE00000003	CDS	5644469	5644950	-

Transcript Sequence
>GWHTAAZE010407 ATGGTAACGGATGGAAGTAGAGTTCAACGGATGGCAGAGAGGATTCTGATTTTAATTTTACATAATAAAAGTGGTGATCTGGGTTCAATTACTGAAACATTTACTAACAATAATTGCGGGGATGTTCAAGAGTATTTAAAATATGTACTTTGCAACGCTGAAGACACTAGTCGGGCTAATGTTGCTCTAATTCAATTTTGGACTCCCACCACCACTACTACTAGTATGATTGGGGGGTGCTGTGTGGTTAGAACATCAAATCAACCCTTTGCTCTTTACGGAATTGAGAGAAGACTTTGTGAGTACAAGAAGTATTGTACTAGCCTTGAATTTAATATCTTCCAAGACGAAGAAAAAGAATATGAAGATAACTTTGGTTGTATAATTGGGCGAGTCTTCAGGGAGAAAGAAGCAAAATTCATTAAACACAATCTGCCGGGTGATTTTGCTCACAAATGCGGTATGCGGAGGTCTTTCTTTCTGCCCATCTTCAAACCTTCCGGCAGGTGCTGTTCTGGTGTACTTGAGATTTCAGTTACTTCCGAAAGTAGTTTCTTTGATTTTGGTCCATACGAACTAGCCAAGGCTATAGTTAAGCAAAGTACAGAAATAGATCAGTTACCCCTTGCTCAGATCTGGATTCCATGCTGTACTAGTACTGCAATGGCCTATGTTGATAGCCCGGGCAAGCGCTGCCATTTCCCTTATTTAAGCTGCAGCAATAAATTTTCATCAAAGAATGGTGACACATATTTCCATTCTAACATGGAAGGCTTCAACCTTGTGTGCATGGATGATGATTTCAGGAATGGTCAGGGTATTGTTGGTAAGGCACTTTTATACCGTAAGAATTGCTTCTGTGGGGATGTTACCCAACTCTCCAAGGCTAAGTACCCGTATTCCCTTGATGCATACATGATTGGGTTAACTGGCTGTTGTGCAATTTGGCTGCACAGTACACGCACTAAGAATCATGATTATGTGCTAGAGTTTTTTCTTCCCCCACTGAACACAGCCTTTGGAGATCCACATAGATACTTGGAGTTGCTATTGGCAACAGTGGAAAGGCAACTTCCAGGTTTTAAAATTCCTGTGAATGATGATGAACCTGATTCTGGTATAATATCCCAAACTTTTAGGGTTAGACTCATACCCGAATCCTATGTAAATGAAAAGAAAACGGTGCAGAACAAAGTGGTTGGTGAAACTGTTATATATAACGGATCAAATATTCTTGGTTTGGAACAAAACGGCATAGTTGTTTGTCATTCAGAGAAAACTGCTGGAGAGGAATTGTTTGTTGAAGCTGCTACGAATGATGAAATAACCATAAGGCTTCCACCCATGCCTGAATCCTTGCGAAATGAAAATGAAGTGGTGCAGCAGCTATCAGATGACGAGCCAAACATGGAAGAAGCTGTTAGAAATAATGAATTGAATATTGGGATTGTAAAGCAAACCAATGCGGCTGTTACATCTTCAGAGAGAAAATTCAGCAGAGCAGAGGCATCGGAGAGAGAATATAGAACAACTAACATTACATTAAGTCGCGAGGATCTCACAAAACATTTTGGAAAGAAACTTGACGATGCTGCAAAGATACTTAATGTTAGTAGATCTAAAATGAAGCGTGCGTGCAGACTTCATAAAATCAACAAGTGGCCACTTCCGAAGAGAAAGAAGGTTAATGCCCTTCGTGTTCGCCGTGGCAATGAAGGAATTGAAGGAACTTACAAGGGAGACCCCTTGTGTTCGGACCCATCTGCTACGCTCTCAACGACAGGTATTTCTCACAAAACAAGTAATTCTAGACAAGAACAAGATGTGGGAACCGTGACCGTAAAGGCAACACATGGAAGTGATACTATTCGGTTTGACCTCCCCTTTTTATCAAGAAAGACGGATTTAGTGGAGAAGGTGACAAGAAGGCTGGGGTTGAATGAGGGATCTTTTCATATCAAGTACCAGGATGAAGATAATGACTGGATTTTAATTGCCTGTGATGAGGACCTAGAGCACTGTTTTGGTATTTGGAAGGGAAATAGAAAAATCAAAATGTTGGTTCAGCCAATTACCAATCAAGCACCATGA

Network for GWHGAAZE010395

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	514	562	1.20E-13
PF00564.25	PB1	611	690	5.50E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.193
	SRR3591706	second leaf	0.072
	SRR3591707	mature leaf	0.308
	SRR3591708	Shoot apex	0.195
	SRR3591709	Stem	0.084
	SRR3591710	White floral bud	0.047
	SRR3591711	White flower	0.105
	SRR3591712	Green floral bud	0.042
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.829
	SRR8316896	Juvenile bud stage	0.526
	SRR8316897	Juvenile bud stage	0.254
	SRR8316894	Third green stage	0.188
	SRR8316900	Third green stage	0.353
	SRR8316901	Third green stage	0.507
	SRR8316898	Complete white stage	0.051
	SRR8316899	Complete white stage	0.398
	SRR8316903	Complete white stage	0.066
	SRR8316902	Silver flowering stage	0.061
	SRR8316904	Silver flowering stage	0.095
	SRR8316905	Silver flowering stage	0.006
	SRR8316906	Gold flowering stage	0.177
	SRR8316907	Gold flowering stage	0.105
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.325
	SRR6706287	Light intensity 50%	0.375
	SRR6706288	Light intensity 20%	0.383
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.838
	CNS0095593	Slightly white alabastrum(diploid) 2	1.226
	CNS0095594	Slightly white alabastrum(diploid) 3	0.904
	CNS0095595	Whole white alabastrum(diploid) 2	0.414
	CNS0095596	Whole white alabastrum(diploid) 3	0.506
	CNS0095597	Whole white alabastrum(diploid) 4	0.256
	CNS0095598	Silvery flower (diploied) 1	0.149
	CNS0095599	Silvery flower (diploied) 2	0.464
	CNS0095600	Silvery flower (diploied) 3	0.092
	CNS0095601	Golden flower (diploid) 1	0.169
	CNS0095602	Golden flower (diploid) 2	0.126
	CNS0095603	Golden flower (diploid) 3	0.061
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.336
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.568
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.209
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.430
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.253
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.095
	CNS0095610	Silvery flower (tetraploid) 1	0.346
	CNS0095611	Silvery flower (tetraploid) 2	0.073
	CNS0095612	Silvery flower (tetraploid) 3	1.126
	CNS0095613	Golden flower (tetraploid) 1	0.033
	CNS0095614	Golden flower (tetraploid) 2	0.208
	CNS0095615	Golden flower (tetraploid) 3	0.117
CRA001975	CRR073297	Stem 1	0.369
	CRR073298	Stem 2	0.109
	CRR073299	Stem 3	0.163
	CRR073300	Leaf 1	0.234
	CRR073301	Leaf 2	0.423
	CRR073302	Leaf 3	0.055
	CRR073303	Juvenile bud 1	0.010
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.133
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.010
	CRR073308	Third green 3	0.047
	CRR073309	Second white 1	0.017
	CRR073310	Second white 2	0.005
	CRR073311	Second white 3	0.049
	CRR073312	Silver flowering 1	0.054
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.041
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.019
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.520
	CRR073319	Tawny withering 2	0.416
	CRR073320	Tawny withering 3	0.184