Gene detail

Detail information of GWHGAAZE010399

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009773780.1	2.83706E-60	PREDICTED: protein NLP7-like isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q8RWY4\|NLP6_ARATH	4E-42	Protein NLP6
trEMBL	tr\|M1AWJ6\|M1AWJ6_SOLTU	1E-59	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400031941}
TAIR10	AT1G64530.1	4E-37	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	5729507	5733061	-
GWHAAZE00000003	mRNA	5729507	5733061	-
GWHAAZE00000003	exon	5729507	5729988	-
GWHAAZE00000003	exon	5730164	5731196	-
GWHAAZE00000003	exon	5731663	5732186	-
GWHAAZE00000003	exon	5732888	5733061	-
GWHAAZE00000003	five_prime_UTR	5733021	5733061	-
GWHAAZE00000003	CDS	5732888	5733020	-
GWHAAZE00000003	CDS	5731663	5732186	-
GWHAAZE00000003	CDS	5730164	5731196	-
GWHAAZE00000003	CDS	5729507	5729988	-

Transcript Sequence
>GWHTAAZE010411 TGGAAGTTCCAAACTATACAATTGGCGAATTCCTTAGAGAAATGGGTCGACCTTTGCAATACAGGGAGCCGACAACTATAAACAATTTCTGGGTTTTCTGGAGCCAAGAAGAAGGACAAGGACAAGATTGGCCTCCCCATCCTCAAAGTACTGATGTAGTCTCATCATCATCATGTGGTGATCTAGGTTCAGTTACTGAAACACTTATCAACAATAATTGCGGGAATGTTCAACAGTACTTAAAACATATACTTTACAACGCTGAAAACACTAGTTGGGCTAATGTTGCTCTAATTCAATTTTGGACTCCCACCACTGCTACTAGTATGATTGGGGGGTGCTGTGTGGTTAAAACATCAAATCAACCTTTTGCTCTTTACGGAATTGAGAGAAGACTTTGTGAGTACCGGAAGTATTGTACGAGCCTTGAATTTCATATCTTCCAAGACGAAGAAAAAGAATATGAAGATAACTTTGGTTGTATAATTGGGCGAGTCTTCAGGGAGAAAGAAGCAGAATTCATTAAACACGATCTGCCGGGTGATTTTGCTCACAAATGCGGTATGCGGAGGTCTTTCTTTCTGCCCATCTTCAAACCTTCCGGCTGGTGCTGTTCTGGTGTACTTGAGATTTCAGTTACTTCCGAAAGTAGTTTCTTTGATTTTGGTCCATACGAACTAGCCAAAGCTGTAGTTAAGGAAAGTACAGAAATAGAAGAGATCAATAAGGCGTTGCAAGGGGTGTGTATGACACTCCAGTTACCCCTTGCTCAGATCTGGATTCCATGCTGTACTAGCACTGCAATGGCCTATGTTGATAGCCCGGGCGAGCGCTGCCATTTCCCTTATTTAAGCTGCAGCAATACATTTTCATTATCAATAAATGCTGATGTATTTGGCCATTATAATATGATAAAAGACTTCAACTATAAGGGCAAGGATCGTGATTTTAGGAAGGGTAAGGGTATTGTTGGTAAGGCACTTTTATACCGTGAGCCTTGCTTCTGCAGTGATGTTACCCGACTCCCCAGGGCTAAGTACTCCTATTCCCTTAATGCATACATGCTTGGGTTAACTGGCTGTTGTGCAATTTGGCTGCACAGTACTCGCACTAAGAATCATGATTATGTGCTAGAGTTTTTTCTTCCCCCTCTGAAGACAGCCTTTGGAGATACAGAGAGATACTTGGAGTTGCTATTCGCAACAGTGGTCAGGCAACTACCAGGTTTTAAAATTCCTGTGAATGTTGATGAATCTTCTAGTGTTAAACTCGTAACCGAATCCTATGTAAAGGAAAAGGAAACGGTGCAGAACAAAGTGGTAGGTGAAACTGCTATATGTAATGTATCAAATATTCTTGGTTTGGAACAAAACGGCATAGTTGTTTGTCATTCAGAGAAAACCACGGGAGAGGAATTGTTTGTTGAAGCTGCTACGAATGATGAAATAACCATAAGGCTTCCACCCATGCCTGAATCCTTGCGAAATGAAAATGAAGTGGTGCAGCAGCTATCAGATGACGAGCCAACCATGGAAGAAGCTGTTAGAAAGAATGAATTGAATATTGGGATCGTAAAGCAGACCAATACGGCAGTTACGTCTTCAGAGAGAATATTCAGCAGAGCAGAGGCATCAGAGAGAGAATATAGAACAACTGACATTACATTAAGTCGCGAGGATCTCACAAAACATTTTGGAAAGAAACTTGACGATGCTGCAAAGATACTTAATGTTAGTAGATCTACAATGAAGCGTGCGTGCAGACTTCATAAAATCAACAAGTGGCCACTTCAGAAGAGAAAGAAGGTTAATGCCCTTCGTGTTCGCAGTGGCAATGAAGGAATTGAAGGAACTTACAAGGGTGACTCCTTGTGTTCGGACCAATCTCCTACACCCGCCACAGCAGGTATTTCTCACAAAACAAGTAATTCTAGACAAGAGCGAGATGTGGGAACCGTGACCGTAAAGGCAACACATGGAGGTGATACTATTCGGTTTGACCTCCCATTTTTATCAAGAAAGACAGATTTAGTGGAGAAGGTGACAACAAGGCTTCGGTTGAATGAAGGATCTTTTCATATCAAGTACCAGGATGAAGATAATGACTGGATTTTAATTGCCTGTGATGAGGACCTGGAGCACTGTTTTGGTATTTGGATGGGAAATAGAAAAATCAAAATGTTGGTTCAGCCAATTACCAATCAAGCACCTTGA

Network for GWHGAAZE010399

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	541	589	1.90E-14
PF00564.25	PB1	638	717	1.30E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.538
	SRR3591706	second leaf	3.445
	SRR3591707	mature leaf	1.907
	SRR3591708	Shoot apex	5.168
	SRR3591709	Stem	4.855
	SRR3591710	White floral bud	0.010
	SRR3591711	White flower	0.011
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.022
SRP173429	SRR8316895	Juvenile bud stage	0.439
	SRR8316896	Juvenile bud stage	0.464
	SRR8316897	Juvenile bud stage	0.540
	SRR8316894	Third green stage	0.213
	SRR8316900	Third green stage	0.480
	SRR8316901	Third green stage	0.253
	SRR8316898	Complete white stage	0.078
	SRR8316899	Complete white stage	0.778
	SRR8316903	Complete white stage	0.101
	SRR8316902	Silver flowering stage	0.024
	SRR8316904	Silver flowering stage	0.247
	SRR8316905	Silver flowering stage	0.077
	SRR8316906	Gold flowering stage	0.215
	SRR8316907	Gold flowering stage	0.049
	SRR8316908	Gold flowering stage	0.597
SRP132670	SRR6706286	Control	0.335
	SRR6706287	Light intensity 50%	0.385
	SRR6706288	Light intensity 20%	0.321
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.237
	CNS0095593	Slightly white alabastrum(diploid) 2	0.457
	CNS0095594	Slightly white alabastrum(diploid) 3	0.485
	CNS0095595	Whole white alabastrum(diploid) 2	0.164
	CNS0095596	Whole white alabastrum(diploid) 3	0.061
	CNS0095597	Whole white alabastrum(diploid) 4	0.109
	CNS0095598	Silvery flower (diploied) 1	0.241
	CNS0095599	Silvery flower (diploied) 2	0.238
	CNS0095600	Silvery flower (diploied) 3	0.175
	CNS0095601	Golden flower (diploid) 1	0.204
	CNS0095602	Golden flower (diploid) 2	0.229
	CNS0095603	Golden flower (diploid) 3	0.187
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.321
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.963
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.456
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.769
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.772
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.084
	CNS0095610	Silvery flower (tetraploid) 1	1.302
	CNS0095611	Silvery flower (tetraploid) 2	1.487
	CNS0095612	Silvery flower (tetraploid) 3	1.172
	CNS0095613	Golden flower (tetraploid) 1	0.678
	CNS0095614	Golden flower (tetraploid) 2	1.647
	CNS0095615	Golden flower (tetraploid) 3	0.558
CRA001975	CRR073297	Stem 1	0.503
	CRR073298	Stem 2	0.488
	CRR073299	Stem 3	0.644
	CRR073300	Leaf 1	0.242
	CRR073301	Leaf 2	0.324
	CRR073302	Leaf 3	0.159
	CRR073303	Juvenile bud 1	0.268
	CRR073304	Juvenile bud 2	0.128
	CRR073305	Juvenile bud 3	0.206
	CRR073306	Third green 1	0.022
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.020
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.047
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.092
	CRR073314	Silver flowering 3	0.317
	CRR073315	Gold flowering 1	0.238
	CRR073316	Gold flowering 2	0.191
	CRR073317	Gold flowering 3	0.248
	CRR073318	Tawny withering 1	1.203
	CRR073319	Tawny withering 2	1.226
	CRR073320	Tawny withering 3	1.150