Gene detail

Detail information of GWHGAAZE010405

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006476342.1	5.72557E-60	PREDICTED: protein NLP7-like [Citrus sinensis]
Swissprot	tr\|Q5NB82\|NLP3_ORYSJ	4E-45	Protein NLP3
trEMBL	tr\|M1B296\|M1B296_SOLTU	6E-60	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400035445}
TAIR10	AT4G24020.1	1E-39	NIN like protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	5857454	5860599	-
GWHAAZE00000003	mRNA	5857454	5860599	-
GWHAAZE00000003	exon	5857454	5857935	-
GWHAAZE00000003	exon	5858110	5859202	-
GWHAAZE00000003	exon	5859305	5859343	-
GWHAAZE00000003	exon	5859825	5860282	-
GWHAAZE00000003	exon	5860473	5860599	-
GWHAAZE00000003	CDS	5860473	5860599	-
GWHAAZE00000003	CDS	5859825	5860282	-
GWHAAZE00000003	CDS	5859305	5859343	-
GWHAAZE00000003	CDS	5858110	5859202	-
GWHAAZE00000003	CDS	5857454	5857935	-

Transcript Sequence
>GWHTAAZE010417 ATGGAAGTTTCAGACTATACCATTGACGATTTCCTTAGAGATATGGCTCCTTTCAATCTGTCATACTGGAAGCCGAAAACTATATATAACTTGTTAGTTTTTTGCAGCAAAGAAGGAGAAGGAGAAGGCGGTAATCAAGAGTATTTAAAATTGGTACTTCGCAACTATGTAGACTATAGTAGGGAAAAAGGTCTAATTCAATTTTGGGCTCCCACTACTATTAGTAGTACAATTGGGGGGCGCTGTGTGCTTAAAACATCGAATCAACCTTTCGGTATTAAGCGAATTGAGAGAGGAGTTTGTGAGTACAGGAAGTATTGTGCCAGCCTTGAATTTAATATCTTCCAAGACGGAGAAAAAGAATATGATGCTGAGTTTGGTAGTATAATTGGGCGAGTCTACAGGGATAGAAAAGCAGAATGCAATCTGCTGCTGGGTGATTTTGCTCTCAAATACGGCATAAGGAGATCTGAATTTTTGCCTGTCTTCAAACCTTCCGGCCACTGCTGTTCTGGTGTACTTGAGATCTCAGTTACTTACGAAAGTATTTTATTAGTATACAAACCAGCCAGAGATATATTTAAGGAAACAAACTTGACAAAACCCTCCCCTCTCAAGTTGCCAGAAAGTATAGAAATAGAAGATATCAATAAGGCATTGCAAGTGGTGTGTACAACACACCAGTTACCCCTTGCTCAGATTTGGATTCCATGCTGTACTAGCACTGCCATGGCCTATGTTGATAGCCCGGGCGAGCGCTGCCATTCCCCTTATTTAAGCTGCGGAAATAAATTTTCATTTCAGAATGCTAATGCAAATTTCCATGCTAAAATGGAAGCCTTCAACCGTGTTTGCAAGGGTTATGGTTTTAGGACGGGTCAGGGTATTGTTGGTAAGGCACTTTTATACCATAAGCCTTGCTTCTGCAGGGATGTAACCCAACTTCCCAAGGCTGAGTACCCCTTTTCCCTTTATGCACGCTCGTATGGCTTAACCGGATGTTATGCAATTTGGTTGCATAGTACTTGCACTAAGAATCATGATTATGTGCTAGAGTTCTACCTTTCCCATTGGAACACAATCTCTAGAGATCCGCAGACATACTTGGAGTTGCTATTGGCAACAGTGAAGAAGCAACTTCCGGGTTTTAAAATTGGTTCAGTGGAAGAGGAATCAAGTGTTGAAGTATGTGAATTTTTTGTGAATAATGATGATCCTGATTCTTTTATGATATCCCATACTACTAGTGTTCAGCCCATACCCAAATCCTTTACAAATGAGAGGGAAACGGCGCAGAATGAAGGGGTAGGTGAAACTGTTATAGACAAGGGATCAAATATTCCTGGTTCGGAACAACATAGCGTAGTTGTTTGTCATTCAGAGAAAATAGCTGGAGAGGAATTGTTCGTTGAAGCTGTTATGAATGATGAAATAACCATTAGTCTTCCACCCATGCCTGAATCCTTGCGAAATGAAAATGAAGTGGTGCAGCAATTATCAGATGACGAGCCAACCATGGAAGAAGCTGTTAGAAAGAATGAATCGAATGTTGCAATAGTAAAGCAAACCAGTGCAGGTGTTGCATTTTCGGAGAGAATATTCGGCGGAGCAGAGGCATCGGAGAGAGAATATAGAACAACTGGCATTTCATTAAGTCGCGAGGATCTCATAAAACATTTTGGAAAGAAGCTTGGCGATGCTGCACGTATACTTGGGGTTAGTAGGTCTACAATGAAGCGTGCGTGCAGACTTCATAAAATCGAGAAGTGGCCATTTCCAAAGAGAAAGAAGGGTAATGCCCTTCGCGTTCACAGTTGCAATGAAGGAATTGAGGGAACTTACAAGGGAAACCCATCATGTTCTGACCCACCTCCTTTGCCCGCCAAAGCAGGTATTTCTCACAAAACAAGTAATTCTAGACAAGAACAAGATGTGGGAACTGTGACCGTAAAAGCAACACATGGAGATGACATTATTCGGTTTCAGCTCCCATTTTTATCAAGAAAGACGGATTTAGTGGAGAAGTTGACAACGAGGCTGTTGTTGAATGAAGGATCTTTTAATATCAAGTATCAGGATGAGGAGAATGAGTGGGTTTTAATTGCCTGTGACGAGGACCTGGAGGAATGCATTGGTATTTGGAAGGGAAAGAGTATAATCAAAATGTTGGTCCAGCCAATTACTAATCAGGCATCTTGA

Network for GWHGAAZE010405

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	551	596	3.50E-13
PF00564.25	PB1	647	726	5.50E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.629
	SRR3591706	second leaf	3.919
	SRR3591707	mature leaf	6.307
	SRR3591708	Shoot apex	4.243
	SRR3591709	Stem	0.678
	SRR3591710	White floral bud	1.645
	SRR3591711	White flower	0.902
	SRR3591712	Green floral bud	1.260
	SRR3591713	Yellow flower	0.319
SRP173429	SRR8316895	Juvenile bud stage	8.826
	SRR8316896	Juvenile bud stage	5.267
	SRR8316897	Juvenile bud stage	0.036
	SRR8316894	Third green stage	0.886
	SRR8316900	Third green stage	1.254
	SRR8316901	Third green stage	1.491
	SRR8316898	Complete white stage	0.366
	SRR8316899	Complete white stage	2.386
	SRR8316903	Complete white stage	0.620
	SRR8316902	Silver flowering stage	0.313
	SRR8316904	Silver flowering stage	0.282
	SRR8316905	Silver flowering stage	0.262
	SRR8316906	Gold flowering stage	0.658
	SRR8316907	Gold flowering stage	0.478
	SRR8316908	Gold flowering stage	0.194
SRP132670	SRR6706286	Control	1.147
	SRR6706287	Light intensity 50%	0.776
	SRR6706288	Light intensity 20%	0.946
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.912
	CNS0095593	Slightly white alabastrum(diploid) 2	4.638
	CNS0095594	Slightly white alabastrum(diploid) 3	6.446
	CNS0095595	Whole white alabastrum(diploid) 2	3.237
	CNS0095596	Whole white alabastrum(diploid) 3	0.958
	CNS0095597	Whole white alabastrum(diploid) 4	1.380
	CNS0095598	Silvery flower (diploied) 1	5.709
	CNS0095599	Silvery flower (diploied) 2	6.163
	CNS0095600	Silvery flower (diploied) 3	1.194
	CNS0095601	Golden flower (diploid) 1	6.426
	CNS0095602	Golden flower (diploid) 2	4.181
	CNS0095603	Golden flower (diploid) 3	3.369
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.001
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.003
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.009
	CNS0095610	Silvery flower (tetraploid) 1	0.004
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.018
	CNS0095614	Golden flower (tetraploid) 2	0.019
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	5.010
	CRR073298	Stem 2	4.007
	CRR073299	Stem 3	1.906
	CRR073300	Leaf 1	1.504
	CRR073301	Leaf 2	3.033
	CRR073302	Leaf 3	0.965
	CRR073303	Juvenile bud 1	0.692
	CRR073304	Juvenile bud 2	0.660
	CRR073305	Juvenile bud 3	0.443
	CRR073306	Third green 1	0.067
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.004
	CRR073309	Second white 1	0.151
	CRR073310	Second white 2	0.468
	CRR073311	Second white 3	0.099
	CRR073312	Silver flowering 1	0.835
	CRR073313	Silver flowering 2	0.776
	CRR073314	Silver flowering 3	0.709
	CRR073315	Gold flowering 1	6.110
	CRR073316	Gold flowering 2	8.615
	CRR073317	Gold flowering 3	2.611
	CRR073318	Tawny withering 1	2.246
	CRR073319	Tawny withering 2	4.579
	CRR073320	Tawny withering 3	1.794