Gene detail

Detail information of GWHGAAZE010407

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009773780.1	2.15144E-63	PREDICTED: protein NLP7-like isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q5NB82\|NLP3_ORYSJ	7E-50	Protein NLP3
trEMBL	tr\|A0A068UXL5\|A0A068UXL5_COFCA	5E-90	Coffea canephora DH200=94 genomic scaffold, scaffold_73 {ECO:0000313\|EMBL:CDP13151.1}
TAIR10	AT1G64530.1	9E-43	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	5898886	5903786	+
GWHAAZE00000003	mRNA	5898886	5903786	+
GWHAAZE00000003	exon	5898886	5899006	+
GWHAAZE00000003	exon	5899181	5899686	+
GWHAAZE00000003	exon	5900461	5900499	+
GWHAAZE00000003	exon	5900601	5901543	+
GWHAAZE00000003	exon	5901718	5903786	+
GWHAAZE00000003	CDS	5898886	5899006	+
GWHAAZE00000003	CDS	5899181	5899686	+
GWHAAZE00000003	CDS	5900461	5900499	+
GWHAAZE00000003	CDS	5900601	5901543	+
GWHAAZE00000003	CDS	5901718	5903786	+

Transcript Sequence
>GWHTAAZE010419 ATGGAAGCATCAAACTATACAAAAGACGATTTCCTTAGAGATATGGCTCCTTTCAATCTGTCATACAGGGATCCGAGAACTATAACCAATTTGTGGGTTTTCTGGAGTCAAGAAGGACAAGGTAATGATCTGGGTTCTGTTACAAACAACAATTGGAGGAATGTTAAAGATTACTTAAAATCTACACTTTGCAACGCTGAATACAAAGACTGTGCCAATGTTCTTATTCAGTTTTGGGCTCCCACTAGTAGTACGATTGGGAGGCGTTGTGTGTTTACAACATCAAATCAACCTTTTAGTGTTTACAGAATTGAGAGAGGAGTTTGTGAGTACAGGAAGTATTGTGCCACTCTTGAATTTAATGTCTTCCAAGATGAAGATAAGTTTAGTAGTCTAATTGGGCGAGTCTTCAAGCGTAAAGTACAAGCATCCACTGAAGAAGGTCATACTGCGAAAGACCATCTGCTGCGTGATTTTGCTCGCAAATGCGGTATAAGGAGATCTGTGTTTCTGCCCCTCTTCAAACCTTCCAGCCAGTGCTGTTCTGGTGTACTTGAGATCATACATACTTCCAAAAGTAGTGTCTTTTTTAATGATTCACTAAGCCTAGCCCAAGATATATTTAAGGAAGCAAACTTGAAAAAACCCTCCCCTCTCGAGTTACTAGAATGTACAGAAATAGAAGAGATCAATAATGCATTGCAAGTGGTGCGTACAACATACCAGTTACCCCTTGCTCAGATCTGGATTCCTTGCTGTACTAGCACTGCCATGGCCTGTGTTGATAGCCTGGGCAAGCGCTGCCATTCCCCTTATTTAAGATGCAGCAAAAACTTTTCATCATCTATATCTTGGAATGGTGATGCATATTTCCATTGTAAGATGAAAGACTTCAACTATTGGTGTTGGAAGTATAATATTGGAAAGGGTCAGGGTATTGTTGGTAAGGCACTTTTATATGATAAACCTTGCTTCTGCAGGGATGTAACCCTACTCCCCACAGCTGAATACCCCTTATCCAAAGTTGCGCGCGTGTATAAGTTAAATGGCTGTTATGCAATTTGGTTGCATAGTACTTGCGCTAAGAATCATGATTATGTGCTAGAGTTCTTCCTTCCCCCTTGCAACACAGTCTCTGGAGATCCAAAGACACATTTGGAGATGCTATTGGCAACAGTGAAGGAGCAATTTCCCGGTTTTAAAATTGGTTCAGTGGGAGAGGAATCATGTGTTGAAGTTTCTGAAATTCCTGTCAATTATGATGAAGCTTATTCTGCTATGATATCCCAAACTACTAGCGTTCAACCTGTACCCAAATCCTTTGCAAATGAAAGGAAAGCAGTGCAGAACGAAGTTGTATGTGAAACGGATATAGACATTGGGTCAAATATTCATGGTTTGGAAAAAAATGGCATAGTTGTTTGTCATTCAGAGAAAACAGCTGGAGAGCAATTGTTTGTCAAAGCTGCTACGAATGATGAAATAAGGCTTCCACCCATAGCAGAGGCATCGGAGATAGAATATAAAACAACTGAAATTACATTAAGTCGTGAGGATCTCCCAAAACATTTTGAAATGAAGCTTGACAATGCTACACAGACACTTGCGGTTAGTAGATCTACAATGAAGAGTGCGTGCAGACTCCGTAAAATAGATAAGGGGCCACATCCGAAGAGAAAGAAGCATGATACCCCTTGTTTTCCCAATGGCAATGAAGGAACTGAAAGGGGAGACCCCTCGTGTTCTGACCCACCTTCTAGGTCCGCCACAGCAGGTATTTCTGGCAAGACAAGTAATTCTATACAAGAACAAGATGTGGGATCCGTGACCATAAAGGCAACACATGGAAATGATACTATTCGGTTTACGATCCCATTTTTATCAAAAAAGACGGATTTAGTGGAGAAGGTGACAATGAGGCTGTCGTTGAATGAAGATTCTTTTAATATCAAGTATCAAGATGAAGCGAAGGAGTGGATTCCAATTGCCTGTGATGAGGACCTGGAGGAATGTATTCGTATTTGGAAGGGAAAGAGTATAATCAGAATGTCGGTTGAGCCAATTACCAATCAAGCACCTTCTAGATCCGCCACAGTAGGTATTTCTGACAAAACAAGTAATTCTATACAAGAACAAGATGTGGGATCCGTGACCATAAAGGCAACACATGGAAATGATACTATTCGGTTTACGATCCCATTTTTATCAAAAAAGACGGATTTAGTGGAGAAGGTGACAATGAGGCTGTCGTTGAATGAAGATTCTTTTAATATCAAGTATCAAGATGAAGCGAAGGAGTGGATTCCAATTGCCTGTGATGAGGACCTGGAGGAATGTATTCGTATTTGGAAGGGAAAGAGTATAATCAGAATGTCGGTTGAGCCAATTACCAATCAAGCACCTTCTAGATCCGCCACAGTGGGTATTTCTGACAAAACAAGTAATTCTATACAAGAACAAGATGTGGGAACTGTGACCATAAAGGCAACACATGGAAATGATACTATTCGGTTTACGCTCCCATTTTTATCAAGAAAGACGGATTTAGTGGAGAAGGTGACAATGAGGCTGTTGTTGAATGAAGATTCTTTTAATATCAAGTATCAAGATGAAGCGATGGAGTGGATTCCAATTGCCTGTGATGAGGACCTGGAGGAATGTATTCGTATTTGGAAGGGAAAGAGTATAATCAGAATGTCGGTTGAGCCAATTACCAATCAAGCACCTTCTAGATCCGCCACAGTAGGTATTTCTGACAAAACAAGTAATTCTATACAAGAACAAGATGTGGGAACCGTGACCATAAAGGTAACACATGGAAATGATACTATTCGGTTTACGCTCCCATTTTTATCAAGAAAGACGGATTTAGTGGAGAAGGTGACAATGAGGCTGTCGTTGAATGAAGATTCTTTTAATATCAAGTATCAAGATGAAGCGAAGGAGTGGATTCCAATTGCCTGTGATGAGGACCTGGAGGAATGTATTTGTATTTGGAAGGGAAAGAGTATAATCAAAATGTTGGTTGAGCCAATTACCAATCAAGCACCTTCTAGGTCTGCCACAGCAGGTATTTCTGACAAAACAAGTAATTCTATACAAGAACAAGATGTGGGAACCGTGACCATAAAGGCAACACATGGAAATGATACTATTCGGTTTACGCTCCCATTTTTATCAAGAAAGACGGATTTAGTGGAGAAGGTGACAATGAGGCTGTCGTTGAATGAAGATTCTTTTAATATCAAGTATCAGGATGAAGCGAAGGAGTGGATTCCAATTGCCTGTGATGAGGACCTGGAGGAATGTATTCGTATTTGGAAGGGAAAGAGTATAATCAAAATGTCGGTTGAGCCAATTACCAGTCAAGCACCTTCTAGGTCCGCCACAGCAGGTATTTCTGACAAAACAAGTAATTCTATACAAGAACAAGATGTGGGAACCGTGACCATAAAGGCAACACATGGAAATGATACTATTCGGTTTACGCTCCCATTTTTATCAAGAAAGACGGATTTAGTGGAGAAGGTGACAATGAGGCTGTCGTTGAATGAAGATTCTTTTAATTTCAAGTATCAGGATGAAGCGAAGGAGTGGATTCTAATTTCCTGTGATGAGGACCTAGAGGAATGTATTCAGTATTTGGAAGGGAAAGAGTATAATCAAAATGTTGGTTGA

Network for GWHGAAZE010407

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	514	561	1.80E-07
PF00564.25	PB1	609	686	3.20E-11
PF00564.25	PB1	717	794	3.20E-11
PF00564.25	PB1	824	902	1.50E-10
PF00564.25	PB1	932	1009	8.10E-11
PF00564.25	PB1	1040	1117	3.70E-11
PF00564.25	PB1	1148	1215	1.90E-10

Protein Sequence

>GWHPAAZE010413
MEASNYTKDDFLRDMAPFNLSYRDPRTITNLWVFWSQEGQGNDLGSVTNNNWRNVKDYLKSTLCNAEYKDCANVLIQFWAPTSSTIGRRCVFTTSNQPFSVYRIERGVCEYRKYCATLEFNVFQDEDKFSSLIGRVFKRKVQASTEEGHTAKDHLLRDFARKCGIRRSVFLPLFKPSSQCCSGVLEIIHTSKSSVFFNDSLSLAQDIFKEANLKKPSPLELLECTEIEEINNALQVVRTTYQLPLAQIWIPCCTSTAMACVDSLGKRCHSPYLRCSKNFSSSISWNGDAYFHCKMKDFNYWCWKYNIGKGQGIVGKALLYDKPCFCRDVTLLPTAEYPLSKVARVYKLNGCYAIWLHSTCAKNHDYVLEFFLPPCNTVSGDPKTHLEMLLATVKEQFPGFKIGSVGEESCVEVSEIPVNYDEAYSAMISQTTSVQPVPKSFANERKAVQNEVVCETDIDIGSNIHGLEKNGIVVCHSEKTAGEQLFVKAATNDEIRLPPIAEASEIEYKTTEITLSREDLPKHFEMKLDNATQTLAVSRSTMKSACRLRKIDKGPHPKRKKHDTPCFPNGNEGTERGDPSCSDPPSRSATAGISGKTSNSIQEQDVGSVTIKATHGNDTIRFTIPFLSKKTDLVEKVTMRLSLNEDSFNIKYQDEAKEWIPIACDEDLEECIRIWKGKSIIRMSVEPITNQAPSRSATVGISDKTSNSIQEQDVGSVTIKATHGNDTIRFTIPFLSKKTDLVEKVTMRLSLNEDSFNIKYQDEAKEWIPIACDEDLEECIRIWKGKSIIRMSVEPITNQAPSRSATVGISDKTSNSIQEQDVGTVTIKATHGNDTIRFTLPFLSRKTDLVEKVTMRLLLNEDSFNIKYQDEAMEWIPIACDEDLEECIRIWKGKSIIRMSVEPITNQAPSRSATVGISDKTSNSIQEQDVGTVTIKVTHGNDTIRFTLPFLSRKTDLVEKVTMRLSLNEDSFNIKYQDEAKEWIPIACDEDLEECICIWKGKSIIKMLVEPITNQAPSRSATAGISDKTSNSIQEQDVGTVTIKATHGNDTIRFTLPFLSRKTDLVEKVTMRLSLNEDSFNIKYQDEAKEWIPIACDEDLEECIRIWKGKSIIKMSVEPITSQAPSRSATAGISDKTSNSIQEQDVGTVTIKATHGNDTIRFTLPFLSRKTDLVEKVTMRLSLNEDSFNFKYQDEAKEWILISCDEDLEECIQYLEGKEYNQNVG

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.520
	SRR3591706	second leaf	0.335
	SRR3591707	mature leaf	0.107
	SRR3591708	Shoot apex	0.570
	SRR3591709	Stem	0.403
	SRR3591710	White floral bud	1.257
	SRR3591711	White flower	2.003
	SRR3591712	Green floral bud	2.351
	SRR3591713	Yellow flower	1.002
SRP173429	SRR8316895	Juvenile bud stage	2.279
	SRR8316896	Juvenile bud stage	2.760
	SRR8316897	Juvenile bud stage	0.146
	SRR8316894	Third green stage	1.230
	SRR8316900	Third green stage	2.714
	SRR8316901	Third green stage	3.024
	SRR8316898	Complete white stage	0.754
	SRR8316899	Complete white stage	4.380
	SRR8316903	Complete white stage	2.086
	SRR8316902	Silver flowering stage	1.470
	SRR8316904	Silver flowering stage	2.036
	SRR8316905	Silver flowering stage	0.667
	SRR8316906	Gold flowering stage	2.466
	SRR8316907	Gold flowering stage	2.834
	SRR8316908	Gold flowering stage	1.012
SRP132670	SRR6706286	Control	1.642
	SRR6706287	Light intensity 50%	1.630
	SRR6706288	Light intensity 20%	1.513
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.469
	CNS0095593	Slightly white alabastrum(diploid) 2	1.224
	CNS0095594	Slightly white alabastrum(diploid) 3	1.256
	CNS0095595	Whole white alabastrum(diploid) 2	1.607
	CNS0095596	Whole white alabastrum(diploid) 3	0.987
	CNS0095597	Whole white alabastrum(diploid) 4	1.399
	CNS0095598	Silvery flower (diploied) 1	2.550
	CNS0095599	Silvery flower (diploied) 2	1.536
	CNS0095600	Silvery flower (diploied) 3	4.310
	CNS0095601	Golden flower (diploid) 1	2.719
	CNS0095602	Golden flower (diploid) 2	4.516
	CNS0095603	Golden flower (diploid) 3	5.274
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.280
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.146
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.855
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.211
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.214
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.648
	CNS0095610	Silvery flower (tetraploid) 1	0.634
	CNS0095611	Silvery flower (tetraploid) 2	0.718
	CNS0095612	Silvery flower (tetraploid) 3	0.622
	CNS0095613	Golden flower (tetraploid) 1	0.196
	CNS0095614	Golden flower (tetraploid) 2	0.314
	CNS0095615	Golden flower (tetraploid) 3	0.443
CRA001975	CRR073297	Stem 1	1.592
	CRR073298	Stem 2	1.288
	CRR073299	Stem 3	1.337
	CRR073300	Leaf 1	1.644
	CRR073301	Leaf 2	1.399
	CRR073302	Leaf 3	0.783
	CRR073303	Juvenile bud 1	0.993
	CRR073304	Juvenile bud 2	0.802
	CRR073305	Juvenile bud 3	0.572
	CRR073306	Third green 1	0.192
	CRR073307	Third green 2	0.185
	CRR073308	Third green 3	0.173
	CRR073309	Second white 1	0.165
	CRR073310	Second white 2	0.442
	CRR073311	Second white 3	0.479
	CRR073312	Silver flowering 1	0.440
	CRR073313	Silver flowering 2	0.165
	CRR073314	Silver flowering 3	0.553
	CRR073315	Gold flowering 1	0.922
	CRR073316	Gold flowering 2	1.406
	CRR073317	Gold flowering 3	0.278
	CRR073318	Tawny withering 1	1.468
	CRR073319	Tawny withering 2	1.826
	CRR073320	Tawny withering 3	1.235