Gene detail

Detail information of GWHGAAZE010408

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006343816.1	5.14661E-33	PREDICTED: protein NLP7-like [Solanum tuberosum]
Swissprot	tr\|Q84TH9\|NLP7_ARATH	8E-15	Protein NLP7
trEMBL	tr\|M1AWJ6\|M1AWJ6_SOLTU	2E-33	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400031941}
TAIR10	AT4G24020.1	7E-14	NIN like protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	5949630	5951703	+
GWHAAZE00000003	mRNA	5949630	5951703	+
GWHAAZE00000003	exon	5949630	5949717	+
GWHAAZE00000003	exon	5950572	5950898	+
GWHAAZE00000003	exon	5951065	5951466	+
GWHAAZE00000003	exon	5951639	5951703	+
GWHAAZE00000003	CDS	5949630	5949717	+
GWHAAZE00000003	CDS	5950572	5950898	+
GWHAAZE00000003	CDS	5951065	5951466	+
GWHAAZE00000003	CDS	5951639	5951703	+

Transcript Sequence
>GWHTAAZE010420 ATGCCTCCTTTCATTCTGTCATACAGGGCGCCGAGAACCGTAAACGATATGTGGGTTTTCTGGAGCCAAGAAGATGGAGAAGGAGAAGCTGGAGAGGAATTGTTTGTTGAAGCTGCTAAGAATGATGAAATAACCATAAGGCTTCCACCCATGCCTGAATCCTTGCGAAATGAAAATGAAGTGGTGCACCAGCAATCAGATGACGAGCCAACCATGGAAGAAGGTGTTAGAAAGAATGAAATCAATGTTGCAATTGTAAAGCAAACCAGTGAGGATGTTACATCTTCAGAGAGAATATTCAGCAGAGTAGAGGCATCGGAGAGAGAATATAGAACAACTGACATTACATTAAGTTACGAGGATCTCATAAAACATTTTGGAAAGAAGCTTGACGATGCTGCAAAGATACTTGAGGTTAGTAGATCTACAATGAAGCGTGCTTGCAGGCGTCATAATATCAAAAAGTGGCCAGCTCCGAAGAGAAAGAAGGTTAATGTCTGTCGTGAAGGAATTGAAGGAACTTACAAGGGAGACCCGTTGTGTTCTGACCCACCTCCTACGCCTGCCGCAGCAGGTATTTCTCACAAAACAAGTAATTCTAGACAAGAACAAGATGCGGGAACCGTGACCGTAAAGGCAACACATGGAGGTGATACTATTCGGTTTGACCTCCCATTTTTATCAAGAAAGTCGGATTTAGTGGAGAAGGTGGCAACGAGGCTGCGGTTGAACGAGGGATCTTTTAATATCAAATATCAGGATGAAGATAATGACTGGATTTTAATTGCCTGCGATGAGGACCTGGATCACTGTATTGCTTTCAACTTGGTTTCGAGTAGTTATGGGTCAAGGCTTGCTGCGTTTGGATTACTAACGGGTTGA

Network for GWHGAAZE010408

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	116	164	7.80E-16
PF00564.25	PB1	208	273	3.30E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.041
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.071
	SRR3591708	Shoot apex	0.106
	SRR3591709	Stem	0.096
	SRR3591710	White floral bud	0.025
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.031
	SRR3591713	Yellow flower	0.021
SRP173429	SRR8316895	Juvenile bud stage	0.579
	SRR8316896	Juvenile bud stage	1.109
	SRR8316897	Juvenile bud stage	0.050
	SRR8316894	Third green stage	0.174
	SRR8316900	Third green stage	0.244
	SRR8316901	Third green stage	0.222
	SRR8316898	Complete white stage	0.151
	SRR8316899	Complete white stage	1.458
	SRR8316903	Complete white stage	0.818
	SRR8316902	Silver flowering stage	0.043
	SRR8316904	Silver flowering stage	0.073
	SRR8316905	Silver flowering stage	0.058
	SRR8316906	Gold flowering stage	0.107
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.543
	SRR6706287	Light intensity 50%	1.788
	SRR6706288	Light intensity 20%	1.627
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.377
	CNS0095593	Slightly white alabastrum(diploid) 2	0.353
	CNS0095594	Slightly white alabastrum(diploid) 3	0.273
	CNS0095595	Whole white alabastrum(diploid) 2	0.203
	CNS0095596	Whole white alabastrum(diploid) 3	0.583
	CNS0095597	Whole white alabastrum(diploid) 4	0.199
	CNS0095598	Silvery flower (diploied) 1	1.941
	CNS0095599	Silvery flower (diploied) 2	0.630
	CNS0095600	Silvery flower (diploied) 3	0.176
	CNS0095601	Golden flower (diploid) 1	0.988
	CNS0095602	Golden flower (diploid) 2	0.213
	CNS0095603	Golden flower (diploid) 3	0.483
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.301
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.236
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.518
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.087
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.152
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.116
	CNS0095610	Silvery flower (tetraploid) 1	0.517
	CNS0095611	Silvery flower (tetraploid) 2	0.614
	CNS0095612	Silvery flower (tetraploid) 3	0.378
	CNS0095613	Golden flower (tetraploid) 1	0.096
	CNS0095614	Golden flower (tetraploid) 2	0.258
	CNS0095615	Golden flower (tetraploid) 3	0.111
CRA001975	CRR073297	Stem 1	0.023
	CRR073298	Stem 2	0.267
	CRR073299	Stem 3	0.127
	CRR073300	Leaf 1	0.108
	CRR073301	Leaf 2	0.214
	CRR073302	Leaf 3	0.124
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.097
	CRR073306	Third green 1	0.127
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.955
	CRR073316	Gold flowering 2	6.431
	CRR073317	Gold flowering 3	0.886
	CRR073318	Tawny withering 1	1.751
	CRR073319	Tawny withering 2	1.385
	CRR073320	Tawny withering 3	0.236