Detail information of GWHGAAZE010420


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004245484.11.87956E-65PREDICTED: protein NLP7 isoform X1 [Solanum lycopersicum]
Swissprottr|Q5NB82|NLP3_ORYSJ3E-41Protein NLP3
trEMBLtr|M1AWJ6|M1AWJ6_SOLTU6E-65Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400031941}
TAIR10AT1G64530.13E-34Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene62377466241196-
GWHAAZE00000003mRNA62377466241196-
GWHAAZE00000003exon62377466238209-
GWHAAZE00000003exon62383856239444-
GWHAAZE00000003exon62395416239579-
GWHAAZE00000003exon62403636240856-
GWHAAZE00000003exon62410736241196-
GWHAAZE00000003CDS62410736241196-
GWHAAZE00000003CDS62403636240856-
GWHAAZE00000003CDS62395416239579-
GWHAAZE00000003CDS62383856239444-
GWHAAZE00000003CDS62377466238209-
Transcript Sequence

Network for GWHGAAZE010420

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02042.16RWP-RK5505983.70E-12
PF00564.25PB16417202.00E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyRWP-RK

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.890
SRR3591706second leaf5.729
SRR3591707mature leaf11.443
SRR3591708Shoot apex4.011
SRR3591709Stem14.592
SRR3591710White floral bud0.000
SRR3591711White flower0.024
SRR3591712Green floral bud0.100
SRR3591713Yellow flower0.046
SRP173429 SRR8316895Juvenile bud stage 1.024
SRR8316896Juvenile bud stage 2.160
SRR8316897Juvenile bud stage 0.110
SRR8316894Third green stage 0.551
SRR8316900Third green stage 0.750
SRR8316901Third green stage 1.457
SRR8316898Complete white stage 0.479
SRR8316899Complete white stage 4.104
SRR8316903Complete white stage 0.694
SRR8316902Silver flowering stage0.265
SRR8316904Silver flowering stage0.422
SRR8316905Silver flowering stage0.132
SRR8316906Gold flowering stage 0.707
SRR8316907Gold flowering stage 0.243
SRR8316908Gold flowering stage 0.265
SRP132670SRR6706286Control2.588
SRR6706287Light intensity 50%2.348
SRR6706288Light intensity 20%1.785
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.939
CNS0095593Slightly white alabastrum(diploid) 21.545
CNS0095594Slightly white alabastrum(diploid) 32.593
CNS0095595Whole white alabastrum(diploid) 21.715
CNS0095596Whole white alabastrum(diploid) 30.206
CNS0095597Whole white alabastrum(diploid) 41.052
CNS0095598Silvery flower (diploied) 14.725
CNS0095599Silvery flower (diploied) 24.035
CNS0095600Silvery flower (diploied) 31.275
CNS0095601Golden flower (diploid) 16.792
CNS0095602Golden flower (diploid) 24.239
CNS0095603Golden flower (diploid) 33.923
CNS0095604Slightly white alabastrum(tetraploid) 10.915
CNS0095605Slightly white alabastrum(tetraploid) 20.436
CNS0095606Slightly white alabastrum(tetraploid) 31.295
CNS0095607Whole white alabastrum(tetraploid) 10.330
CNS0095608Whole white alabastrum(tetraploid) 20.375
CNS0095609Whole white alabastrum(tetraploid) 30.897
CNS0095610Silvery flower (tetraploid) 10.817
CNS0095611Silvery flower (tetraploid) 21.034
CNS0095612Silvery flower (tetraploid) 31.054
CNS0095613Golden flower (tetraploid) 10.248
CNS0095614Golden flower (tetraploid) 20.846
CNS0095615Golden flower (tetraploid) 30.101
CRA001975CRR073297Stem 11.054
CRR073298Stem 21.088
CRR073299Stem 30.483
CRR073300Leaf 10.751
CRR073301Leaf 20.997
CRR073302Leaf 30.350
CRR073303Juvenile bud 10.046
CRR073304Juvenile bud 20.025
CRR073305Juvenile bud 30.466
CRR073306Third green 10.076
CRR073307Third green 20.022
CRR073308Third green 30.095
CRR073309Second white 10.036
CRR073310Second white 20.112
CRR073311Second white 30.024
CRR073312Silver flowering 10.040
CRR073313Silver flowering 20.136
CRR073314Silver flowering 30.046
CRR073315Gold flowering 16.651
CRR073316Gold flowering 28.884
CRR073317Gold flowering 36.258
CRR073318Tawny withering 16.172
CRR073319Tawny withering 29.387
CRR073320Tawny withering 34.737