Gene detail

Detail information of GWHGAAZE010431

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601280.1	2.20635E-67	PREDICTED: protein NLP7-like isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q5NB82\|NLP3_ORYSJ	1E-46	Protein NLP3
trEMBL	tr\|M1B296\|M1B296_SOLTU	2E-62	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400035445}
TAIR10	AT1G64530.1	7E-43	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	6641881	6644851	+
GWHAAZE00000003	mRNA	6641881	6644851	+
GWHAAZE00000003	exon	6641881	6642046	+
GWHAAZE00000003	exon	6642209	6642711	+
GWHAAZE00000003	exon	6642998	6643036	+
GWHAAZE00000003	exon	6643137	6644193	+
GWHAAZE00000003	exon	6644367	6644851	+
GWHAAZE00000003	CDS	6641881	6642046	+
GWHAAZE00000003	CDS	6642209	6642711	+
GWHAAZE00000003	CDS	6642998	6643036	+
GWHAAZE00000003	CDS	6643137	6644193	+
GWHAAZE00000003	CDS	6644367	6644851	+

Transcript Sequence
>GWHTAAZE010443 ATGTCAAAGAATACCATTGACAATTTCCCTAGAGATATGGAATTGTCAAACTATACCATTCTCCATTTCTGTAGAGATATGGATCCTTTCAATCTGTCATACAGGGGGCCGAGAGCTGAACCCAATATGTGGGTTTTCTGGAGCAAAGGAGAAGTAGAAGGAGAAGGTGCAGATCTTGATTCAGTTACTGAGACACTTGCCAACAAAAATTGGGGGAATGTTCAAGAGTACCTAAAATCTGCTCTTGGCAATGCTAAATACATTTATGGTGATAATGTTCTGATTCAATTTTGGGCTCCCACCACTACTAGTAGTATGAGTGGGGGGCACTGTGTGCTTACAACATCAAATCAACCTTTTGGTATTTACAGAATTGAGAGAGGAGTTTGTGAGTACAGGAAGCATTGTACCAGCTTTGAAATTAATATCTTCCAAGATGACTATGGTAGTATAATTGGGCAAGTCTTCAGGGATAAAGAAGAAGAAGAATGCACTGATGACTATATGCTGGGTGATTTTGCGCACAAATGCGGCATAAGGAGATCTTTCTTCCTGCCCCTCTTCAAACCTCCCAGCCGGTGCTGTTCTGGTGTACTTGAGATCTCAGATACTTCCGAAAGTAGTATATTTTTGGTTGATCCAATCACCATGGCCAAAGCTATAATTGAGGAAGCGAACATTATGAAACTCTCCCCTTTCGAGTTGGAAGAAATAGAAGAGATCAATAAGGCATTGCAAGGGGTGTGTACAACACAGCAGTTACCCCTTGCTCAGATCTGGATTCCATGCTGTACTAGCACTGCCATGGCCTATGTTGATTGCCCGGGCGACCACTGCCATTCCCCTTATTTAAGCTGCAGCAATAAATTTTCATCCTCAATATCCCATAGTGAAGTGAAAAGCTTCAACATTTCCAGTACATTTTATAATTTCAGAAAGGGTGAGAGTATTGTTGGTAAGGCACTTTTATATCAGAAGCCTTGCTTCTGCAGGGATGTCACCCAACTACCCGAGGCTGAGTACCCCTTATCCAATGCTGCACTCATGTATGGGTTAACTGGCTGTTGTGCAATTTGGTTGCACAGTACTTGCACCAAGAATCGTGATTATGTGCTAGAGTTCTTCCTTCCCCCTTGGAACACAATCTCTAGAGATCCGCAGGGATACATGGAGTTGCTATTGGCAACAGTGAAGAAGCAACTTCCAGGTTTTAAAATTACTTCGGTGGGAGAGGAATCATGTGTGAAAGTATGTGAAATTTTTGTGAATGATAATGAACCTGATTCTGTTGTAATATCCCAAACTTTTAGTGTTAAACCCGCACCTGAATCCTTTGCAAATGAAAAGGAAGTGGTGCAGAACGAAGTGGTAGGTGAAATTGTTATAGACTATGGATCAAATATTCTTTGTTTAGAACAAAACAGCATAGTTGTTTGTCATTCAGAGAAAATAGCTGTTGAAGCTGCTATGAATGATGAAATAACCATATGGCTTCCACCCGTGCCTGAATCCTTGCGAAATGAAAATGAAGTGGTCCAGGAGCAATCCGATGATGAGCCAATCATGGAAGAAGGTGTTAGAAAGAATGAACTGAATGTTGCGATTGTAATGCAAACCAGTGAGGCTGTTACATCTTCAGAGAGAATATTCAGCAGAGCAGAGGCATCGGAGAGAGAATATAGAACAACTGACTTTACATTAGGTTACGAGGATCTCATAAAACATTTTGGAAAGAAGCTTGACGATGCTGCACAGATACTTGGCGTTAGTAGATCTACAGTGAAGCGTGCTTGCAGACTTCATAATATCGGTAAGTGGCCAGTTCCAAAGAGAAAGAAAGTTAATGCCCTTCGTGTTCGCAGTGGCAATGAAGGAATTGAAGGAACCTCCAAGGGAGACCCCTCGTGTTCTGACCTACCTCCTATGCCCGCCACAGCAGGTATTTCGCACAAAACAAGTAATTCTAGAGAAGAACAAGATGTGGGAAAGGTGACCCTAAAGGTGACACATGGAAATGATACTTTTCGGTTTAAGCTCCCATTTTCATCAAGAAAGGCGGATTTAGTGGAGAAATTGAAAACAAGGGTGTCGTTGAATGAAGAATCTTTTAATATAAAGTATCAGGATGAAGAGAATGAGTGGATTTCAATTGCCTGTGATGAGGACCTGGCGGAGTGTATTGATATTTGGAAGGGAAAGAGTAAGATAATCAAAATGTTGGTTGTGCCAATTACCAATCAAGCACCTTGA

Network for GWHGAAZE010431

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	567	614	4.10E-13
PF00564.25	PB1	664	743	6.20E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.583
	SRR3591706	second leaf	4.367
	SRR3591707	mature leaf	2.491
	SRR3591708	Shoot apex	5.483
	SRR3591709	Stem	4.832
	SRR3591710	White floral bud	0.125
	SRR3591711	White flower	0.092
	SRR3591712	Green floral bud	0.391
	SRR3591713	Yellow flower	0.012
SRP173429	SRR8316895	Juvenile bud stage	1.403
	SRR8316896	Juvenile bud stage	1.834
	SRR8316897	Juvenile bud stage	0.335
	SRR8316894	Third green stage	0.927
	SRR8316900	Third green stage	3.331
	SRR8316901	Third green stage	2.449
	SRR8316898	Complete white stage	0.874
	SRR8316899	Complete white stage	1.165
	SRR8316903	Complete white stage	0.919
	SRR8316902	Silver flowering stage	0.305
	SRR8316904	Silver flowering stage	1.100
	SRR8316905	Silver flowering stage	0.396
	SRR8316906	Gold flowering stage	1.246
	SRR8316907	Gold flowering stage	0.678
	SRR8316908	Gold flowering stage	0.972
SRP132670	SRR6706286	Control	2.183
	SRR6706287	Light intensity 50%	2.255
	SRR6706288	Light intensity 20%	2.295
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.703
	CNS0095593	Slightly white alabastrum(diploid) 2	1.259
	CNS0095594	Slightly white alabastrum(diploid) 3	1.400
	CNS0095595	Whole white alabastrum(diploid) 2	1.509
	CNS0095596	Whole white alabastrum(diploid) 3	2.052
	CNS0095597	Whole white alabastrum(diploid) 4	1.169
	CNS0095598	Silvery flower (diploied) 1	1.506
	CNS0095599	Silvery flower (diploied) 2	1.230
	CNS0095600	Silvery flower (diploied) 3	1.548
	CNS0095601	Golden flower (diploid) 1	1.367
	CNS0095602	Golden flower (diploid) 2	1.292
	CNS0095603	Golden flower (diploid) 3	0.982
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.239
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.250
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.158
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.942
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.743
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.950
	CNS0095610	Silvery flower (tetraploid) 1	1.723
	CNS0095611	Silvery flower (tetraploid) 2	1.277
	CNS0095612	Silvery flower (tetraploid) 3	2.100
	CNS0095613	Golden flower (tetraploid) 1	0.238
	CNS0095614	Golden flower (tetraploid) 2	1.492
	CNS0095615	Golden flower (tetraploid) 3	0.438
CRA001975	CRR073297	Stem 1	2.525
	CRR073298	Stem 2	2.498
	CRR073299	Stem 3	2.346
	CRR073300	Leaf 1	3.618
	CRR073301	Leaf 2	3.114
	CRR073302	Leaf 3	3.160
	CRR073303	Juvenile bud 1	2.429
	CRR073304	Juvenile bud 2	2.154
	CRR073305	Juvenile bud 3	2.338
	CRR073306	Third green 1	1.845
	CRR073307	Third green 2	2.029
	CRR073308	Third green 3	1.580
	CRR073309	Second white 1	0.957
	CRR073310	Second white 2	0.626
	CRR073311	Second white 3	0.768
	CRR073312	Silver flowering 1	0.576
	CRR073313	Silver flowering 2	0.494
	CRR073314	Silver flowering 3	0.184
	CRR073315	Gold flowering 1	0.787
	CRR073316	Gold flowering 2	1.023
	CRR073317	Gold flowering 3	0.294
	CRR073318	Tawny withering 1	4.951
	CRR073319	Tawny withering 2	3.143
	CRR073320	Tawny withering 3	4.302