Gene detail

Detail information of GWHGAAZE010434

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011083180.1	4.11655E-49	PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Sesamum indicum]
Swissprot	tr\|Q9LX54\|FBL62_ARATH	2E-36	Putative F-box/LRR-repeat protein At3g59170
trEMBL	tr\|A5BLF6\|A5BLF6_VITVI	9E-49	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN74740.1}
TAIR10	AT3G59170.1	1E-33	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	6700517	6703171	-
GWHAAZE00000003	mRNA	6700517	6703171	-
GWHAAZE00000003	exon	6702137	6703171	-
GWHAAZE00000003	exon	6701868	6702020	-
GWHAAZE00000003	exon	6700517	6701014	-
GWHAAZE00000003	CDS	6702137	6703171	-
GWHAAZE00000003	CDS	6701868	6702020	-
GWHAAZE00000003	CDS	6700697	6701014	-
GWHAAZE00000003	three_prime_UTR	6700517	6700696	-

Transcript Sequence
>GWHTAAZE010446 ATGGATCCAAACCCTGAATCCACTAAGCTTCTAGTACAACAACAAAAAACCCGAACCCTAGATGATAGTAATCCCACCGGAATTGACAGAATCAGCAATTTGCCTGACGAAATTCTGTGCCATATCCTCTCTTTTCTCCCCACTAAATACGCTGTTGGTACTTCAATTCTCTCCACACGATGGAAGAATCTCTTCCCTTTCATCCCCAAACTCTCACTCAACTTCGATGATTCTTTACTCTTACATCCCCACAAAGAAAACCCTAATTTGATCCCTAATTTTGTTAAATTTATGTACAATGTGATGAACCGTATGATAATTACTGCGCCGCGCATTTTTAGCTTTAATCTTAAATGTCAACGAGATTACGAGGGAGTTAGAGAACTCACTGGTGAGGTTGATGAGGATAATGACGGCAAATATTCGCATCTTATTATCTGGATTTATTTGGCATTATGTAAGAATGTTAGAGAACTTTCTGTTTATGTTGATAATGAGGATAGTGATTTTAATCGGTTTCCTGAACAATTGTTTCAATGCTTGAGTGTAATGTGGGTTACTATCAGTGGGCGTTTCTTTTTTGATGTTCCTACTATGGTACTTTTGCTGAATATACGGAGCATGTACTTGGATCGTGTAGTGTTTCCTAACGGCAAAGCGGTTGAACGGCTTATTAGTAGGTGCTTTTTTATTGAAGAGTTTTGTTTAGAGAGATGCTATTTTCAAGAACTTGATGTTCTTAAGATATCCAGTACAGCGCTTAAGCTTTTGGTGATAATTAATTGTAAGTGGGATGAAAAGTATGAAGTTGTGCTTGATGTTCCAAATCTTGAGCTCTTTAATTACCAGGAAGATACTATTGCTTATGAATATACGCTCAAGAATATGGGCTGCGTTCGTAAAGCTCACATAGACATTGGAATTGGTTGGGATCAAGGACTTGAGGATGGATTGCGCTATGAGGCTAATGCAGTGGGGCTTGTTGCGGCTTGCTCGAATCTCGAAACACTATATTTATCACAGAATTCATTGCATGCCATCCAATATTGCCAATTTTACTGGAGATCTGTAAAACCCTTTTGTAATTTGACTACCTTGAAGCTTGGTCTTATCGACAACCCTGGTTGGCTTTTTTTGGTACGCTTGCTCGATAGTACGCCCAACCTTGAATTCCTTGAATTCATTTGGGGATTTATGGAGTACGAAGACTTTCCAGATTTTGTGTCTAGTGTGGCCAAACGTCAGCCTCAGTGTCTGTCATCCCATCTTGACAAAGTTAAGATTGAGGAATTCACTGGGGACGAAGATGAGCTCAGTGTGGTAGAATTTTTCTTAGAGAGTGCAAAAGTTCTGAGGGAGCTAGAAATCGTTTCTGATTTATCTTCAGAGGAGCAGTTGAACATTAGCAAAAAAGTATCATTGTTTCCAAAATGCTCAGCCATTTGTGAGATTGTGTTTACAAGTACTGCAGAAAGCAAGTATGAGTTTTGGGATATTCTAATGTGATGAAAGGACAGTAAAATATTAACGAATTGTTGATGTATTTCTTCTATTTTGAGTACATTTGCCATTTTCTTGATTGTTTCTTGGATCTATCATGTGTTAGTTTTCACAGTTGTGATCCATACTGATGGGAACTATTATGTTTATCATCAAAATTTCCTTTTGGTGGTCTTTGTTGGAGTA

Network for GWHGAAZE010434

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	30	64	5.30E-08
PF07723.14	LRR_2	206	228	5.70E-05
PF08387.11	FBD	416	456	4.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.382
	SRR3591706	second leaf	2.045
	SRR3591707	mature leaf	2.769
	SRR3591708	Shoot apex	3.507
	SRR3591709	Stem	2.889
	SRR3591710	White floral bud	3.322
	SRR3591711	White flower	3.917
	SRR3591712	Green floral bud	4.580
	SRR3591713	Yellow flower	3.686
SRP173429	SRR8316895	Juvenile bud stage	0.872
	SRR8316896	Juvenile bud stage	1.086
	SRR8316897	Juvenile bud stage	1.776
	SRR8316894	Third green stage	0.506
	SRR8316900	Third green stage	1.458
	SRR8316901	Third green stage	0.752
	SRR8316898	Complete white stage	0.248
	SRR8316899	Complete white stage	0.345
	SRR8316903	Complete white stage	0.368
	SRR8316902	Silver flowering stage	0.163
	SRR8316904	Silver flowering stage	0.105
	SRR8316905	Silver flowering stage	0.011
	SRR8316906	Gold flowering stage	0.197
	SRR8316907	Gold flowering stage	0.264
	SRR8316908	Gold flowering stage	2.916
SRP132670	SRR6706286	Control	0.158
	SRR6706287	Light intensity 50%	0.323
	SRR6706288	Light intensity 20%	0.265
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.434
	CNS0095593	Slightly white alabastrum(diploid) 2	1.117
	CNS0095594	Slightly white alabastrum(diploid) 3	0.873
	CNS0095595	Whole white alabastrum(diploid) 2	0.908
	CNS0095596	Whole white alabastrum(diploid) 3	0.904
	CNS0095597	Whole white alabastrum(diploid) 4	1.665
	CNS0095598	Silvery flower (diploied) 1	0.687
	CNS0095599	Silvery flower (diploied) 2	1.133
	CNS0095600	Silvery flower (diploied) 3	0.976
	CNS0095601	Golden flower (diploid) 1	1.278
	CNS0095602	Golden flower (diploid) 2	0.978
	CNS0095603	Golden flower (diploid) 3	1.039
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.797
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.894
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.080
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.083
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.852
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.946
	CNS0095610	Silvery flower (tetraploid) 1	10.851
	CNS0095611	Silvery flower (tetraploid) 2	11.203
	CNS0095612	Silvery flower (tetraploid) 3	7.836
	CNS0095613	Golden flower (tetraploid) 1	4.963
	CNS0095614	Golden flower (tetraploid) 2	9.582
	CNS0095615	Golden flower (tetraploid) 3	6.688
CRA001975	CRR073297	Stem 1	0.648
	CRR073298	Stem 2	0.819
	CRR073299	Stem 3	0.396
	CRR073300	Leaf 1	0.527
	CRR073301	Leaf 2	0.319
	CRR073302	Leaf 3	0.060
	CRR073303	Juvenile bud 1	0.289
	CRR073304	Juvenile bud 2	0.018
	CRR073305	Juvenile bud 3	0.078
	CRR073306	Third green 1	0.066
	CRR073307	Third green 2	0.119
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.070
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.044
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.100
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.315
	CRR073317	Gold flowering 3	0.881
	CRR073318	Tawny withering 1	0.071
	CRR073319	Tawny withering 2	0.359
	CRR073320	Tawny withering 3	0.338