Gene detail

Detail information of GWHGAAZE010441

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010512146.1	1.56648E-61	PREDICTED: uncharacterized protein LOC104788152 isoform X1 [Camelina sativa]
Swissprot	tr\|Q8L7H1\|FBL75_ARATH	5E-42	F-box/LRR-repeat protein At4g14103
trEMBL	tr\|A5BLF6\|A5BLF6_VITVI	1E-56	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN74740.1}
TAIR10	AT4G14103.1	2E-33	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	7359313	7377563	-
GWHAAZE00000003	mRNA	7359313	7377563	-
GWHAAZE00000003	exon	7377078	7377563	-
GWHAAZE00000003	exon	7376860	7377003	-
GWHAAZE00000003	exon	7376475	7376658	-
GWHAAZE00000003	exon	7375770	7375846	-
GWHAAZE00000003	exon	7370625	7371725	-
GWHAAZE00000003	exon	7370407	7370550	-
GWHAAZE00000003	exon	7370025	7370205	-
GWHAAZE00000003	exon	7369647	7369745	-
GWHAAZE00000003	exon	7369354	7369430	-
GWHAAZE00000003	exon	7364643	7365737	-
GWHAAZE00000003	exon	7364424	7364567	-
GWHAAZE00000003	exon	7364041	7364211	-
GWHAAZE00000003	exon	7363474	7363569	-
GWHAAZE00000003	exon	7359443	7359720	-
GWHAAZE00000003	exon	7359313	7359343	-
GWHAAZE00000003	CDS	7377078	7377563	-
GWHAAZE00000003	CDS	7376860	7377003	-
GWHAAZE00000003	CDS	7376475	7376658	-
GWHAAZE00000003	CDS	7375770	7375846	-
GWHAAZE00000003	CDS	7370625	7371725	-
GWHAAZE00000003	CDS	7370407	7370550	-
GWHAAZE00000003	CDS	7370025	7370205	-
GWHAAZE00000003	CDS	7369647	7369745	-
GWHAAZE00000003	CDS	7369354	7369430	-
GWHAAZE00000003	CDS	7364643	7365737	-
GWHAAZE00000003	CDS	7364424	7364567	-
GWHAAZE00000003	CDS	7364041	7364211	-
GWHAAZE00000003	CDS	7363474	7363569	-
GWHAAZE00000003	CDS	7359443	7359720	-
GWHAAZE00000003	CDS	7359313	7359343	-

Transcript Sequence
>GWHTAAZE010453 ATGCGGGTTAATATAAGTGGGCGTTTCATTTTGGATGTTCCCACCGTGGTTTTTATGCCAAATCTAAGGAGCATTTTCTTGGATCGTGTTAAGTTTCGTAACGGGGAAGCGGTTCAATCACTTATTAGAGGGTGCCTTTTTCTCGAAAGGTTTGGTTTAGAGAGTTGCGAATTTGAAGAACTAGAAGTTCTTGAGATATCCAGTACTAAGCTTAAGCATTTGATGGTAATTGATTGTAAGTGGGATGGAGAATATGAATTTGTGCTTGATGTTCCGAGCCTTGCATACCTTCTTTACCAAGCGGATGGTATTGCTTATGATTATCCAGTCAAGAATCTGAGCTCCGTTCGTGAAGCTGACTTAGACATTAGAATTACTTGGGATCAATTACAAGATGATTCACCCCATTACGAGGATACTGCTTTTGAGTTTGTTGCGGCTTGTTTGAATGTTGAAAACCTATGTTTGTCACAGAATTCATTGCGTGCCATTCATCAGTACTGGCAATCCAAAAAACCCACTTTTTGTAATTTGACCACCTTGAAGCTTGGTATTGATGACTGTGGATGGTTTCTTTTGGCATCCTTGCTCGAAAGTTCGCCCAACCTTGAAGTTCTTGGATTCACAGAGGGGTTTACCGGCTGTACATTGTTTCCAGAATTCGTCTCTTGTGTGACCAAACATGAGCCTCAATGTCTGTCATCCCATCTTCGAAAAGTTATGATTGAAGACTTCACTGGGGACGAATATGAGCTAAATGTTGTAGAATTTTTCTTGAAGAATGCAAAAGTTCTGAGGGAGGTGGAAATTGATTGGTTTCCGCCTTTTGCAGATGGGTGCTTGGCTCCAGCTGCCATCCGTTTTAACATTATTACGCCAAAACCCTTTTTACATCTCAATTCAATTGAGTTCCCTTCAAATCTCACAAAATCAACAACATCAGCTTCCCTGTTCTTCTGTGTAACGCACTCAATTTCAGGTATGGATCCAGACCCTAAACCCAAAAAGCTTCTTCTTCTTCAACAACAAAAACAAACCCTAACCCTAGATGACAGAATCAGTGATTTGCCGGACGAAATTCTGTGCCATATCCTCTCCTTTCTCCCCACCAAATACGCCGCCGGCACTTCAGCTCTATCGACACGATGGAAGCACCTCTTCGCTTTCATCCCCGAACTCTCGCTCGATTTCGATGACTCGTTACTCTTAAACCCCCACAAAGATAAAGATAACAATCTTACTTCGTTAGCTATTTTTGCTCTTTTTATTTATAATGTGATGATTGTTGTGTATACTAATGACCTCCGCATATATAGCTTTAGCCTTAAATGCCAACGAGATTACGATTGTCTATCACACGAGGGCGATTCCCCGGTTGCTAGGTGGGTTCATTTGGCATTGTCTAGAGAAGTTAGAGATCTTAGTGTTCAAGTTGATAATTATAATAAGGATGATGATAAGGATTCTATTTTGTTTCCTGATCGATTTTTTTATTGCTCAAGTGTAATTTGGGTTACTATAAGTGGGCGTTTCTTTTTGGATGTTCCCACCGTGGTTTTTATGCCAAATCTAAGGAGCATTTTCTTGGATCGTGTTAAGTTTCCTAACGGGGAAGCGGTTCAATCACTTATTAGAGGGTGCCTTTTTCTTGAAAGGTTTGGTTTAAAGAGTTGCGAATTTGAAGAACTAGAAGTTCTTGAGATATCCAGTACTAAGCTTAAGCATTTGATGGTAACTGATTGTAAGTGGGATGGAGAATATGAAATTGTGCTTGATGTCCCGAACCTTGAAGTCCTTCTTTACGAAGCGGATGGTATTGCTGATGATTATCCAGTCAAGAATCTGAGCTCCGTTCGTGAAGCTTACTTAGACATTAGAATTAGTTGGGATCAAGCACAAGATGATGTGTCCCATTACGAGGATACTGCTTTTGAGTTTGTTGCGGCTTGTTCGAATGTTGAAACCCTATATTTGTCACAGAATTCATTGCTTGCCATTCATTGGTACTGGGAATCCATAAAACCCACTTTCTGTAATTTGACCACCTTGAAGCTTGGTATCGATGACTGTGGATGGTTTTTTTTGGCATCCTTGCTCGAAAGTTCGCCCAACCTTGAAGTTCTTGGATTCACAGGGGGGTTTACCGACTGTAGAGTGTTTCCAGAATTCGTCTCTTGTGTGACCGAACATGAGCCTCAATGTCTGTCATCCCATCTTCGAAAAGTTGTGATTCATGACTTCACTGGGGACGAATATGAGCTAAATGTTGTAGAATTTTTCTTAAAGAATGCAAAAGTTCTGAGGGAGGTGGAAATTGTGGTAGACTTGGACCTGTTATTTGTTGCCCCAACGTTACTCTTTCACACCGTGGCTCAAATCCCTGGTCTCAGATCACAGGCTTGTCATCTCTCTCTGCGGTTGCGGGCTTTTGCTGAGGGGTGCTTGGCTCCAGCTGCCATCGGTTTTAACTTTGTTACGCCAAAACCCTTTTTACATCTCAATTCAGTTGAATTCCCTTCAAATCTCACAAAATCAACATCAGCTTCCCTGTTCTTCTCCGTAACGCACTCAATTTCAGGTATGGATCCAAACCCTAAACCCAAAAAGCTTCTTCTTCAACAACAACAACAAACCCTAAACCTAGATGACAGAATCAGCGATTTGCCTGACGAAATTCTGTGCCACATCCTCTCGTTTCTCCCCACCAAATACGCCGCCGGCACTTCAACTCTATCGACACGATGGAAGCACATCTTCGCTTTCATCCCCAAACTCTCACTCGATTTCGATGACTCGTTACTCTTAAACCCCGACAAAGATAAAGATAACAATCTTACTTCGTTAGCTATTTTTGCTCTTTTTGTTTATAGTGTGATGAATGTTGTGTATACTAATAACCTCCGCATTTATAGCTTTAGCCTTAAATGTCAACGAGATTACGATTGTATACCACACGATGGCGATTCCTTGGTTGCTATGTGGGTTCATTTGGCATTGTCTAGAAAAGTTAGAGATCTTACTGTTCAAGTTGATAATTATAATAAGGATAATGATAAGGATTCTATTTTGTTTCCTGATCAATTTTTTTATTGCTCGAGTGTAATGCGGGTTACCATAAGTGGGTGTTTCTTTTTGGATGTTCCCACTGTGGTTTTTATGCCAAATTTAAGGAGCATTTTCTTGGATCGTGTTAAGTTTCCTAACGGGGAAGCAGTTCAATCGTTTATTAGAGGGTGCCTTTTTCTCGAAAGGGTTGGTTTAGAGAGTTGCGAATTTGAAGAACTAGAAGTTCTTGAGATATCCAGTACTAAGCTTAAGCATTTGATGGTAATTGATTGTAAGTGGGATGGAGAATATGAATTTGCGCTTGATGTCCCGAACCTTGAAGTCCTTCATTACCAAGCGGATAGTATTGCTTATGATTATCCAGTCAAGAATCTGAGCTCAGTTCGTGAAGCTTACTTAGACATTGGAATTAGTTGGGATCAATTAGAAGATGATGCATCCCATTACGCGGATACTGCTGTTGAGTTTTTTGCGGCTTGTTCGAATGTTGAAACTCTATATTTGTCACAGAATTCAATGCCTGCCATTCATTGGTCCTCGGAATCCATAAAGCCCACTTTTTGTAATTTGACCACCTTGAAGCTTGGTATCAATGAATCTGGATGGTCTTTTTTGGCATCCTTGCTTGAAAGTTCGCCCAACCTTGAAGTTCTTGGATTCACAGGGGGGTTTACCGACTGTGAAGTGTTTCCAGAATTTGTCTCTTGTGTGACCAAATATGAGCCTCAATGTCTGTCATCCCATCTTCGAAAAGTTATGATTCAAGACTTCACTGGGGATGAATATGAGCTAAATGTTGTAGAATTTTTCTTAAAGAATGCAAAAGTTCTGAGGGAGTTTCAATTTGGATGCTTGAATTCTTATGAACGATTAATGTCACTTAAGCAAACCACCTTCTTGGTTTCTGCTATTGATTTTGAAATCTTATTTTCGTACCAAGCTGAAGCATTGATAATAGTTGATTGTAAGTGGGATGGAGACTATGAGTTTGTGCTTGATGGCCCGATCCTTGAAGTCCTTCGTTACCAAGCGGATAGTATTGCTTATGATTATCCAGTCAAGAATCTGAGCTCCGTTCGAGAAGCTTACTTAGACATTGGAATTAGTTGGGATCAATCACAAGATGACGAACCCCATTATGAGGATATTGCGGTCGCGTTTGTTGTGGCTTCTAATGTTGAAACCCATATTTATAACATAATTCATTGCCTGCCATCCATTGGTCCTGGGCACTTTTTGTAA

Network for GWHGAAZE010441

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07723.14	LRR_2	21	45	0.01
PF08387.11	FBD	230	270	5.90E-12
PF00646.34	F-box	352	386	2.00E-06
PF07723.14	LRR_2	523	547	0.0044
PF08387.11	FBD	732	772	4.60E-13
PF00646.34	F-box	884	918	1.90E-06
PF07723.14	LRR_2	1055	1079	0.0096
PF08387.11	FBD	1264	1302	7.90E-12

Protein Sequence

>GWHPAAZE010447
MRVNISGRFILDVPTVVFMPNLRSIFLDRVKFRNGEAVQSLIRGCLFLERFGLESCEFEELEVLEISSTKLKHLMVIDCKWDGEYEFVLDVPSLAYLLYQADGIAYDYPVKNLSSVREADLDIRITWDQLQDDSPHYEDTAFEFVAACLNVENLCLSQNSLRAIHQYWQSKKPTFCNLTTLKLGIDDCGWFLLASLLESSPNLEVLGFTEGFTGCTLFPEFVSCVTKHEPQCLSSHLRKVMIEDFTGDEYELNVVEFFLKNAKVLREVEIDWFPPFADGCLAPAAIRFNIITPKPFLHLNSIEFPSNLTKSTTSASLFFCVTHSISGMDPDPKPKKLLLLQQQKQTLTLDDRISDLPDEILCHILSFLPTKYAAGTSALSTRWKHLFAFIPELSLDFDDSLLLNPHKDKDNNLTSLAIFALFIYNVMIVVYTNDLRIYSFSLKCQRDYDCLSHEGDSPVARWVHLALSREVRDLSVQVDNYNKDDDKDSILFPDRFFYCSSVIWVTISGRFFLDVPTVVFMPNLRSIFLDRVKFPNGEAVQSLIRGCLFLERFGLKSCEFEELEVLEISSTKLKHLMVTDCKWDGEYEIVLDVPNLEVLLYEADGIADDYPVKNLSSVREAYLDIRISWDQAQDDVSHYEDTAFEFVAACSNVETLYLSQNSLLAIHWYWESIKPTFCNLTTLKLGIDDCGWFFLASLLESSPNLEVLGFTGGFTDCRVFPEFVSCVTEHEPQCLSSHLRKVVIHDFTGDEYELNVVEFFLKNAKVLREVEIVVDLDLLFVAPTLLFHTVAQIPGLRSQACHLSLRLRAFAEGCLAPAAIGFNFVTPKPFLHLNSVEFPSNLTKSTSASLFFSVTHSISGMDPNPKPKKLLLQQQQQTLNLDDRISDLPDEILCHILSFLPTKYAAGTSTLSTRWKHIFAFIPKLSLDFDDSLLLNPDKDKDNNLTSLAIFALFVYSVMNVVYTNNLRIYSFSLKCQRDYDCIPHDGDSLVAMWVHLALSRKVRDLTVQVDNYNKDNDKDSILFPDQFFYCSSVMRVTISGCFFLDVPTVVFMPNLRSIFLDRVKFPNGEAVQSFIRGCLFLERVGLESCEFEELEVLEISSTKLKHLMVIDCKWDGEYEFALDVPNLEVLHYQADSIAYDYPVKNLSSVREAYLDIGISWDQLEDDASHYADTAVEFFAACSNVETLYLSQNSMPAIHWSSESIKPTFCNLTTLKLGINESGWSFLASLLESSPNLEVLGFTGGFTDCEVFPEFVSCVTKYEPQCLSSHLRKVMIQDFTGDEYELNVVEFFLKNAKVLREFQFGCLNSYERLMSLKQTTFLVSAIDFEILFSYQAEALIIVDCKWDGDYEFVLDGPILEVLRYQADSIAYDYPVKNLSSVREAYLDIGISWDQSQDDEPHYEDIAVAFVVASNVETHIYNIIHCLPSIGPGHFL

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.949
	SRR3591706	second leaf	2.033
	SRR3591707	mature leaf	2.425
	SRR3591708	Shoot apex	5.818
	SRR3591709	Stem	3.740
	SRR3591710	White floral bud	2.898
	SRR3591711	White flower	3.657
	SRR3591712	Green floral bud	3.969
	SRR3591713	Yellow flower	3.711
SRP173429	SRR8316895	Juvenile bud stage	3.604
	SRR8316896	Juvenile bud stage	5.249
	SRR8316897	Juvenile bud stage	2.358
	SRR8316894	Third green stage	2.239
	SRR8316900	Third green stage	6.318
	SRR8316901	Third green stage	4.905
	SRR8316898	Complete white stage	1.629
	SRR8316899	Complete white stage	6.502
	SRR8316903	Complete white stage	2.531
	SRR8316902	Silver flowering stage	1.752
	SRR8316904	Silver flowering stage	2.674
	SRR8316905	Silver flowering stage	1.050
	SRR8316906	Gold flowering stage	3.155
	SRR8316907	Gold flowering stage	2.955
	SRR8316908	Gold flowering stage	3.425
SRP132670	SRR6706286	Control	3.542
	SRR6706287	Light intensity 50%	3.130
	SRR6706288	Light intensity 20%	3.706
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.365
	CNS0095593	Slightly white alabastrum(diploid) 2	5.158
	CNS0095594	Slightly white alabastrum(diploid) 3	3.740
	CNS0095595	Whole white alabastrum(diploid) 2	4.170
	CNS0095596	Whole white alabastrum(diploid) 3	4.383
	CNS0095597	Whole white alabastrum(diploid) 4	4.027
	CNS0095598	Silvery flower (diploied) 1	4.695
	CNS0095599	Silvery flower (diploied) 2	3.451
	CNS0095600	Silvery flower (diploied) 3	5.079
	CNS0095601	Golden flower (diploid) 1	2.693
	CNS0095602	Golden flower (diploid) 2	4.384
	CNS0095603	Golden flower (diploid) 3	3.434
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.048
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.430
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.083
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.194
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.696
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.867
	CNS0095610	Silvery flower (tetraploid) 1	5.693
	CNS0095611	Silvery flower (tetraploid) 2	6.775
	CNS0095612	Silvery flower (tetraploid) 3	5.637
	CNS0095613	Golden flower (tetraploid) 1	3.340
	CNS0095614	Golden flower (tetraploid) 2	4.491
	CNS0095615	Golden flower (tetraploid) 3	4.193
CRA001975	CRR073297	Stem 1	2.829
	CRR073298	Stem 2	2.693
	CRR073299	Stem 3	1.806
	CRR073300	Leaf 1	2.583
	CRR073301	Leaf 2	2.682
	CRR073302	Leaf 3	1.876
	CRR073303	Juvenile bud 1	2.769
	CRR073304	Juvenile bud 2	1.635
	CRR073305	Juvenile bud 3	2.483
	CRR073306	Third green 1	0.286
	CRR073307	Third green 2	0.480
	CRR073308	Third green 3	0.566
	CRR073309	Second white 1	0.809
	CRR073310	Second white 2	1.115
	CRR073311	Second white 3	0.383
	CRR073312	Silver flowering 1	0.277
	CRR073313	Silver flowering 2	0.743
	CRR073314	Silver flowering 3	0.675
	CRR073315	Gold flowering 1	1.039
	CRR073316	Gold flowering 2	1.174
	CRR073317	Gold flowering 3	0.387
	CRR073318	Tawny withering 1	1.731
	CRR073319	Tawny withering 2	2.289
	CRR073320	Tawny withering 3	1.826