Detail information of GWHGAAZE010460


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009792642.10PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Nicotiana sylvestris]
Swissprottr|Q67ZE1|HSDD2_ARATH03beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
trEMBLtr|A0A068V1W2|A0A068V1W2_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_90 {ECO:0000313|EMBL:CDP14626.1}
TAIR10AT2G26260.17E-1753beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene81381938142642-
GWHAAZE00000003mRNA81381938142642-
GWHAAZE00000003exon81381938138231-
GWHAAZE00000003exon81386578138855-
GWHAAZE00000003exon81394968139575-
GWHAAZE00000003exon81404148140539-
GWHAAZE00000003exon81410868141256-
GWHAAZE00000003exon81419658142098-
GWHAAZE00000003exon81421918142280-
GWHAAZE00000003exon81424118142642-
GWHAAZE00000003CDS81424118142642-
GWHAAZE00000003CDS81421918142280-
GWHAAZE00000003CDS81419658142098-
GWHAAZE00000003CDS81410868141256-
GWHAAZE00000003CDS81404148140539-
GWHAAZE00000003CDS81394968139575-
GWHAAZE00000003CDS81386578138855-
GWHAAZE00000003CDS81381938138231-
Transcript Sequence

Network for GWHGAAZE010460

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01073.203Beta_HSD92836.00E-79
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K235583BETAHSDD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Steroid biosynthesismap00100

Gene Ontology

GO term OntologyName
GO:0006694biological_processsteroid biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0003854molecular_function3-beta-hydroxy-delta5-steroid dehydrogenase activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.277
SRR3591706second leaf10.300
SRR3591707mature leaf8.866
SRR3591708Shoot apex13.400
SRR3591709Stem11.819
SRR3591710White floral bud13.335
SRR3591711White flower13.864
SRR3591712Green floral bud14.620
SRR3591713Yellow flower8.832
SRP173429 SRR8316895Juvenile bud stage 8.950
SRR8316896Juvenile bud stage 13.594
SRR8316897Juvenile bud stage 5.560
SRR8316894Third green stage 5.057
SRR8316900Third green stage 14.539
SRR8316901Third green stage 13.606
SRR8316898Complete white stage 5.379
SRR8316899Complete white stage 16.031
SRR8316903Complete white stage 9.744
SRR8316902Silver flowering stage5.329
SRR8316904Silver flowering stage9.508
SRR8316905Silver flowering stage3.358
SRR8316906Gold flowering stage 10.221
SRR8316907Gold flowering stage 12.866
SRR8316908Gold flowering stage 12.447
SRP132670SRR6706286Control19.572
SRR6706287Light intensity 50%21.273
SRR6706288Light intensity 20%24.171
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.253
CNS0095593Slightly white alabastrum(diploid) 27.146
CNS0095594Slightly white alabastrum(diploid) 36.473
CNS0095595Whole white alabastrum(diploid) 26.804
CNS0095596Whole white alabastrum(diploid) 39.059
CNS0095597Whole white alabastrum(diploid) 48.573
CNS0095598Silvery flower (diploied) 16.899
CNS0095599Silvery flower (diploied) 28.851
CNS0095600Silvery flower (diploied) 315.603
CNS0095601Golden flower (diploid) 15.441
CNS0095602Golden flower (diploid) 211.121
CNS0095603Golden flower (diploid) 312.095
CNS0095604Slightly white alabastrum(tetraploid) 17.588
CNS0095605Slightly white alabastrum(tetraploid) 25.655
CNS0095606Slightly white alabastrum(tetraploid) 317.059
CNS0095607Whole white alabastrum(tetraploid) 13.425
CNS0095608Whole white alabastrum(tetraploid) 25.913
CNS0095609Whole white alabastrum(tetraploid) 317.485
CNS0095610Silvery flower (tetraploid) 114.908
CNS0095611Silvery flower (tetraploid) 218.095
CNS0095612Silvery flower (tetraploid) 311.857
CNS0095613Golden flower (tetraploid) 16.182
CNS0095614Golden flower (tetraploid) 210.972
CNS0095615Golden flower (tetraploid) 39.699
CRA001975CRR073297Stem 113.291
CRR073298Stem 210.254
CRR073299Stem 312.694
CRR073300Leaf 19.445
CRR073301Leaf 210.484
CRR073302Leaf 39.810
CRR073303Juvenile bud 113.157
CRR073304Juvenile bud 28.118
CRR073305Juvenile bud 315.215
CRR073306Third green 13.737
CRR073307Third green 23.817
CRR073308Third green 34.635
CRR073309Second white 13.637
CRR073310Second white 23.089
CRR073311Second white 33.417
CRR073312Silver flowering 13.858
CRR073313Silver flowering 23.018
CRR073314Silver flowering 32.247
CRR073315Gold flowering 13.232
CRR073316Gold flowering 25.642
CRR073317Gold flowering 33.766
CRR073318Tawny withering 18.069
CRR073319Tawny withering 23.564
CRR073320Tawny withering 310.657