Gene detail

Detail information of GWHGAAZE010461

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002282161.2	PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Vitis vinifera]
Swissprot	tr\|Q67ZE1\|HSDD2_ARATH	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
trEMBL	tr\|A0A068V1W2\|A0A068V1W2_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_90 {ECO:0000313\|EMBL:CDP14626.1}
TAIR10	AT2G26260.1	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	8226221	8233344	+
GWHAAZE00000003	mRNA	8226221	8233344	+
GWHAAZE00000003	exon	8226221	8226461	+
GWHAAZE00000003	exon	8226594	8226683	+
GWHAAZE00000003	exon	8226776	8226909	+
GWHAAZE00000003	exon	8227613	8227783	+
GWHAAZE00000003	exon	8228334	8228459	+
GWHAAZE00000003	exon	8229299	8229378	+
GWHAAZE00000003	exon	8230022	8230220	+
GWHAAZE00000003	exon	8230646	8230751	+
GWHAAZE00000003	exon	8231037	8231211	+
GWHAAZE00000003	exon	8232046	8232202	+
GWHAAZE00000003	exon	8232978	8233044	+
GWHAAZE00000003	exon	8233187	8233344	+
GWHAAZE00000003	CDS	8226221	8226461	+
GWHAAZE00000003	CDS	8226594	8226683	+
GWHAAZE00000003	CDS	8226776	8226909	+
GWHAAZE00000003	CDS	8227613	8227783	+
GWHAAZE00000003	CDS	8228334	8228459	+
GWHAAZE00000003	CDS	8229299	8229378	+
GWHAAZE00000003	CDS	8230022	8230220	+
GWHAAZE00000003	CDS	8230646	8230751	+
GWHAAZE00000003	CDS	8231037	8231211	+
GWHAAZE00000003	CDS	8232046	8232202	+
GWHAAZE00000003	CDS	8232978	8233044	+
GWHAAZE00000003	CDS	8233187	8233344	+

Transcript Sequence
>GWHTAAZE010473 GAAAAAGAAATGGAAGGGCAAGAAAGATGGTGTGTTGTGACTGGGGGAAGAGGCTTTGCTGCAAGACATTTGGTGGAAATGCTCATCCATTACGACATGTTTTTGGTTCGTGTTGCTGACTTGGGGCCCACCCTCAAACTCGAGCCTGAAGAGGAAAAAGGAACACTTGGTGATGCTATACGGACTGGCCGTGCTCAATATGTATCAACTGATCTTCGAGACAAGTCTCAAGTAGTAAAAGCACTCCAAGGAGCTGAAGTTGTTTTCCACATGGCTGCTCCGGATTCCTCCATTAACAACTACGAACTTCATCATTCAGTTAATGTACAAGGAACCAAGAACGTTATTGATGCTTGCATTGAGCTAAATGTAAAGAGACTTATTTATACTAGCTCCCCTAGTGTGGTCTTTGATGGGGTGCATGGAATACTTAATGGGGATGAATCATTGCCATATCCCACTAAGCACAATGATACGTATTCTGCAACCAAAGCTGAGGGAGAGGCACTGGTTATCAAGTCAAACGGTAAAAACGGGCTTCAAACATGCTGCATTCGACCTAGTAGCATTTTTGGTCCTGGTGATAAGCTGCTTGTCCCTTCTTTAGTTGCTGCAGCAAGAGCAGGGAAATCCAAGTTTATTATTGGCGACGGAAATAACATGTATGATTTTACTTACGTTGAAAATGTGGCACATGCTCATATATGTGCTGAGCGAGCTCTAGCATCAAGTGGGGAAGTTGCTGATAGAGCTGCAGGTGAGGCATACTTCATAACTAATATGGAGCCAATAAAGTTTTGGGAGTTTGTCTCACTTATTCTTGGAGGTCTTGGCTATGAAAGGCCAAGGATTAAGATTCCTGCCTATGTTATGATGCCCATTGCACACATCGTTGAGCGGACATATAAGCTGTTAGCGCCATATGGGATGAAGGTTCCGCAGTTGACACCTTCAAGAATCAGACTCCTCTCCTGCAGTAGAACGTTTAATTGTTCGAAAGCAAATGACAGACTTGGCTACACGCCCATTGTTCCATTCCAGGAGGGACTTAGGAGGACAATTGAGTCGTACTCATTCTTGAGGGCTGAACTTCAACGTAAAAAGGAAGGCCCGTCAAAAGCATATATATATCTTGGAAGTGGAAGGGTTGCTGACACACTTCTTTGGAGGGATAAAAAGCAGACCCTCATCACATTGCTAGTTTTGATTGCATTTTACTTCAATTTCGTAGCATCTGGATATACCGTCATTACTGCAGTCTCAAAGCTTCTGATAGTGGCATCAATCTTTTTGTTCATCCATGGAAAACTACCTGGAAAAATACTGGGATATAATATTGAAAAAATTCCCGAGTCAAATTTTCATCTTTCAGAAGAGATGTCACATAAAATTGCTTTGTCAGTTGCATCATCATGGAACACTGCAGCAAATAGTTTGAAATCCCTTTGCAAAGGGAACGACTGGATGTTATTCTTCAAGGTGGTTATCTTTCTATTGAATCTGAGCTTCCTTGGAGCCATTTCAGTGCACAGTTTGTTTCTTATAGTACTACCCATTGCGTTTGTTGGTTTCTTCGTGTACGAGAAAAAGGAGGATGAAGTTGATGGTCTCATCCTAGAGATTCTCTCGCTTGGATGCAAATTGAAATCCAACATTGTGAGGAAAGTTTTCAACTATAAGAGTCTCAGCAGCAAAAGTGAGTAA

Network for GWHGAAZE010461

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01073.20	3Beta_HSD	12	286	2.30E-78
PF02453.18	Reticulon	383	538	8.20E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K23558	3BETAHSDD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0006694	biological_process	steroid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0003854	molecular_function	3-beta-hydroxy-delta5-steroid dehydrogenase activity
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.627
	SRR3591706	second leaf	12.902
	SRR3591707	mature leaf	9.532
	SRR3591708	Shoot apex	19.788
	SRR3591709	Stem	17.043
	SRR3591710	White floral bud	14.061
	SRR3591711	White flower	17.363
	SRR3591712	Green floral bud	17.545
	SRR3591713	Yellow flower	12.968
SRP173429	SRR8316895	Juvenile bud stage	13.499
	SRR8316896	Juvenile bud stage	19.762
	SRR8316897	Juvenile bud stage	9.770
	SRR8316894	Third green stage	9.070
	SRR8316900	Third green stage	25.507
	SRR8316901	Third green stage	20.947
	SRR8316898	Complete white stage	7.934
	SRR8316899	Complete white stage	23.096
	SRR8316903	Complete white stage	12.930
	SRR8316902	Silver flowering stage	9.921
	SRR8316904	Silver flowering stage	11.524
	SRR8316905	Silver flowering stage	4.958
	SRR8316906	Gold flowering stage	14.554
	SRR8316907	Gold flowering stage	16.603
	SRR8316908	Gold flowering stage	14.537
SRP132670	SRR6706286	Control	16.697
	SRR6706287	Light intensity 50%	17.924
	SRR6706288	Light intensity 20%	17.550
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.341
	CNS0095593	Slightly white alabastrum(diploid) 2	16.173
	CNS0095594	Slightly white alabastrum(diploid) 3	12.434
	CNS0095595	Whole white alabastrum(diploid) 2	15.296
	CNS0095596	Whole white alabastrum(diploid) 3	15.343
	CNS0095597	Whole white alabastrum(diploid) 4	12.551
	CNS0095598	Silvery flower (diploied) 1	11.703
	CNS0095599	Silvery flower (diploied) 2	14.278
	CNS0095600	Silvery flower (diploied) 3	21.179
	CNS0095601	Golden flower (diploid) 1	9.571
	CNS0095602	Golden flower (diploid) 2	18.890
	CNS0095603	Golden flower (diploid) 3	15.835
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.737
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.882
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.253
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.550
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.732
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.462
	CNS0095610	Silvery flower (tetraploid) 1	17.835
	CNS0095611	Silvery flower (tetraploid) 2	17.451
	CNS0095612	Silvery flower (tetraploid) 3	14.173
	CNS0095613	Golden flower (tetraploid) 1	7.535
	CNS0095614	Golden flower (tetraploid) 2	15.726
	CNS0095615	Golden flower (tetraploid) 3	12.280
CRA001975	CRR073297	Stem 1	8.997
	CRR073298	Stem 2	9.535
	CRR073299	Stem 3	8.927
	CRR073300	Leaf 1	10.681
	CRR073301	Leaf 2	10.069
	CRR073302	Leaf 3	7.979
	CRR073303	Juvenile bud 1	9.697
	CRR073304	Juvenile bud 2	5.476
	CRR073305	Juvenile bud 3	8.333
	CRR073306	Third green 1	3.585
	CRR073307	Third green 2	3.648
	CRR073308	Third green 3	3.110
	CRR073309	Second white 1	5.670
	CRR073310	Second white 2	5.160
	CRR073311	Second white 3	4.910
	CRR073312	Silver flowering 1	4.430
	CRR073313	Silver flowering 2	4.080
	CRR073314	Silver flowering 3	2.544
	CRR073315	Gold flowering 1	4.495
	CRR073316	Gold flowering 2	7.489
	CRR073317	Gold flowering 3	6.838
	CRR073318	Tawny withering 1	11.462
	CRR073319	Tawny withering 2	12.833
	CRR073320	Tawny withering 3	12.160