Gene detail

Detail information of GWHGAAZE010483

Functional Annotation

Database	Orthologs	E value	Annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	10595242	10602102	+
GWHAAZE00000003	mRNA	10595242	10602102	+
GWHAAZE00000003	exon	10595242	10595310	+
GWHAAZE00000003	exon	10596104	10596167	+
GWHAAZE00000003	exon	10596687	10596766	+
GWHAAZE00000003	exon	10596910	10597042	+
GWHAAZE00000003	exon	10597743	10597811	+
GWHAAZE00000003	exon	10599139	10599224	+
GWHAAZE00000003	exon	10600061	10600182	+
GWHAAZE00000003	exon	10600458	10600518	+
GWHAAZE00000003	exon	10601151	10601249	+
GWHAAZE00000003	exon	10601989	10602102	+
GWHAAZE00000003	CDS	10595242	10595310	+
GWHAAZE00000003	CDS	10596104	10596167	+
GWHAAZE00000003	CDS	10596687	10596766	+
GWHAAZE00000003	CDS	10596910	10597042	+
GWHAAZE00000003	CDS	10597743	10597811	+
GWHAAZE00000003	CDS	10599139	10599224	+
GWHAAZE00000003	CDS	10600061	10600182	+
GWHAAZE00000003	CDS	10600458	10600518	+
GWHAAZE00000003	CDS	10601151	10601249	+
GWHAAZE00000003	CDS	10601989	10602102	+

Transcript Sequence
>GWHTAAZE010495 ATATCTCGGTTATTGGAACTATTTCTTGCCTATGAGGAAGATCATAATGTGAAGCTTATAATTTTGAAGGGAAGAGGAAGAGCCTTCTGTGCTGGTGGCGATGTTGCAGCTGTAGTCCGTGATATTAAGGAAGGTAATTGGAAATTAGGTGCAAAATATTTCTGGAAGGAATTCATATTGAACTATGTGATGGCAACATACAAGAAGCCCCAGGTTTCTATTCTTTATGGAATTGTCATGGGAGGCGGAGCTGGTGCTTCAATACATGGTAGATTCCGAGTTGCAACAGAGAATTCGGTATTTGTCTCTCCCCCCTTAATCTCAATTTTGAAGTACTTTTTCTTTGAAACGGCTTTGGGACTCTTCCCTGATGTAGGGGCCTCTTATTACTTATCAAGACTCCCTGGATTCTTCGGAGAATATGTTGGTCTTGCTGGTGCTAGGTTGGATGGTGCTGAGATGCTTGCATGTGGCCTTGCGACTCACTTTGTGCCCGCAGAGAGACTATCAATGTTAGAAGAGGCACTAAACAAGGTATACTCGAATGATCCCACAGTTATTTCTGGCATTATTAGTGAATTCTCTCAGTATCCTAATTTGAAAGAGAAGAGTGCTTATTACTGGATGGATATTATTGATAGGTGTTTCTCTCAAAGAACGGTTGAAGATATTTTATCTGCCTTAGAAATTGAGGCCAAAAACAGCAAGGATGATTGGATCTCTACAACCCTACAATCATTGAAGAAAGCATCCCCTATGAGTCTTAAAATTTCTCTTAGATCGATTAGAGAAGGGAGACTCCAAGGTGTTGGCCAATGCCTTGTGCTAGAGTACAGAATGGTTTGTCATGTCATGAGAGGAGAAGTCAGCAAGGATTTCATTGAGGTGCCAACCTAA

Network for GWHGAAZE010483

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040
CFinderModule0066

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.079
	SRR3591706	second leaf	0.373
	SRR3591707	mature leaf	0.017
	SRR3591708	Shoot apex	0.150
	SRR3591709	Stem	0.136
	SRR3591710	White floral bud	0.020
	SRR3591711	White flower	0.082
	SRR3591712	Green floral bud	0.008
	SRR3591713	Yellow flower	0.013
SRP173429	SRR8316895	Juvenile bud stage	5.553
	SRR8316896	Juvenile bud stage	6.132
	SRR8316897	Juvenile bud stage	0.674
	SRR8316894	Third green stage	2.541
	SRR8316900	Third green stage	5.523
	SRR8316901	Third green stage	6.624
	SRR8316898	Complete white stage	2.829
	SRR8316899	Complete white stage	7.466
	SRR8316903	Complete white stage	5.429
	SRR8316902	Silver flowering stage	3.380
	SRR8316904	Silver flowering stage	4.998
	SRR8316905	Silver flowering stage	1.823
	SRR8316906	Gold flowering stage	5.405
	SRR8316907	Gold flowering stage	4.951
	SRR8316908	Gold flowering stage	2.144
SRP132670	SRR6706286	Control	7.514
	SRR6706287	Light intensity 50%	7.242
	SRR6706288	Light intensity 20%	7.066
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.407
	CNS0095593	Slightly white alabastrum(diploid) 2	5.496
	CNS0095594	Slightly white alabastrum(diploid) 3	4.518
	CNS0095595	Whole white alabastrum(diploid) 2	4.677
	CNS0095596	Whole white alabastrum(diploid) 3	5.562
	CNS0095597	Whole white alabastrum(diploid) 4	6.722
	CNS0095598	Silvery flower (diploied) 1	4.666
	CNS0095599	Silvery flower (diploied) 2	4.027
	CNS0095600	Silvery flower (diploied) 3	2.888
	CNS0095601	Golden flower (diploid) 1	5.540
	CNS0095602	Golden flower (diploid) 2	3.043
	CNS0095603	Golden flower (diploid) 3	2.833
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.287
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.093
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.710
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.298
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.741
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.788
	CNS0095610	Silvery flower (tetraploid) 1	1.236
	CNS0095611	Silvery flower (tetraploid) 2	1.014
	CNS0095612	Silvery flower (tetraploid) 3	1.479
	CNS0095613	Golden flower (tetraploid) 1	0.855
	CNS0095614	Golden flower (tetraploid) 2	1.195
	CNS0095615	Golden flower (tetraploid) 3	0.591
CRA001975	CRR073297	Stem 1	5.120
	CRR073298	Stem 2	4.614
	CRR073299	Stem 3	1.275
	CRR073300	Leaf 1	6.086
	CRR073301	Leaf 2	6.034
	CRR073302	Leaf 3	0.890
	CRR073303	Juvenile bud 1	0.958
	CRR073304	Juvenile bud 2	0.232
	CRR073305	Juvenile bud 3	0.834
	CRR073306	Third green 1	0.433
	CRR073307	Third green 2	0.477
	CRR073308	Third green 3	0.514
	CRR073309	Second white 1	0.275
	CRR073310	Second white 2	0.212
	CRR073311	Second white 3	0.233
	CRR073312	Silver flowering 1	0.476
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.680
	CRR073316	Gold flowering 2	0.409
	CRR073317	Gold flowering 3	0.012
	CRR073318	Tawny withering 1	1.808
	CRR073319	Tawny withering 2	4.007
	CRR073320	Tawny withering 3	0.607