Gene detail

Detail information of GWHGAAZE010487

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009794376.1	2.1325E-139	PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Nicotiana sylvestris]
Swissprot	tr\|Q9LKJ1\|HIBC1_ARATH	4E-130	3-hydroxyisobutyryl-CoA hydrolase 1
trEMBL	tr\|A0A067KKY6\|A0A067KKY6_JATCU	6E-139	Uncharacterized protein {ECO:0000313\|EMBL:KDP32479.1}
TAIR10	AT5G65940.1	3E-105	beta-hydroxyisobutyryl-CoA hydrolase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	10863845	10871129	+
GWHAAZE00000003	mRNA	10863845	10871129	+
GWHAAZE00000003	exon	10863845	10863850	+
GWHAAZE00000003	exon	10864037	10864100	+
GWHAAZE00000003	exon	10864627	10864706	+
GWHAAZE00000003	exon	10864852	10864935	+
GWHAAZE00000003	exon	10865671	10865755	+
GWHAAZE00000003	exon	10866707	10866792	+
GWHAAZE00000003	exon	10868254	10868352	+
GWHAAZE00000003	exon	10869128	10869229	+
GWHAAZE00000003	exon	10869911	10869952	+
GWHAAZE00000003	exon	10870526	10871129	+
GWHAAZE00000003	CDS	10863845	10863850	+
GWHAAZE00000003	CDS	10864037	10864100	+
GWHAAZE00000003	CDS	10864627	10864706	+
GWHAAZE00000003	CDS	10864852	10864935	+
GWHAAZE00000003	CDS	10865671	10865755	+
GWHAAZE00000003	CDS	10866707	10866792	+
GWHAAZE00000003	CDS	10868254	10868352	+
GWHAAZE00000003	CDS	10869128	10869229	+
GWHAAZE00000003	CDS	10869911	10869952	+
GWHAAZE00000003	CDS	10870526	10870663	+
GWHAAZE00000003	three_prime_UTR	10870664	10871129	+

Transcript Sequence
>GWHTAAZE010499 ATGAAGGGAAAAGGAAGAGCTTTCTGTGCTGGTGGCGATGTTGCAGCTGTAGTCTGTGATATTAAGGAAGGTAATTGGAAATTAGGTGCAAAATATTTCTGGAAGGAATTCATCTTGAACTATGTGATGGCAACATACAACAAGCCCCAGGTTTCTATTCTTTATGGAATTGTCATGGGAGGCGGAGCTGGTGCTTCAATACATGGTAGATTCCGAGTTGCAACAGAGAATTCGGTTTTTGCAATGCCAGAAACGGCTTTGGGACTCTTCCCTGATGTAGGGGCCTCTTATTACTTATCAAGACTCCCTGGATTCTTCGGAGAATATATTGGGTTTGTTGGTGCTAGGTTGGATGGTGTTGAGATGCTTGCATGTGGCCTTGCGACTCACTTTGTGCCCGCAGAGGAAATCGAGGCCAAAAACAGCAAGGATGATTGGATCTCTACAACCCTACAATCATTGAAGAAAGCATCCCCTATGATTCTTAAAATTTCTCTTAGATCGATTAGAGAAGGGAGACTCCAAGGTGTTGGCCAATGCCTTGTGCGAGAGTACATAATGGTTTGTCATGCCATGAGAGGAGAAGTCAGCAAGGATTTCATTGAGGGCTGTAGGGCTATACTATTCGACAAGGATAGAAACCCGAAGTGGAATCCTTCTAAGCTAGAACAAATCAGCGATGAAATGGTTGACTGTTACTTCTCCAAGGTGGATGATGAAGAATGGGAAGATCTAAAACTCCCTCCCAGGTCAAACTTGCCTGCACATGCCATTGCGAAGCTCTAGTTTATAATTTGACAAGATATTGCAATTTGGACCGCCCCTTCTTGAATAATTCAATCAGGTAAAATTCTCAATACATCTCATTTTGTTTTAGGTTGCCATATAAGTGAATTTGGTTATTTCTAAGACTATCATAGGACGAGTATTTAGGGTGAGAAATAAGAAATATTTAGAATATATTGCAATAGATATGATATGCATGAATACATGATGTGTTAAAGGTTGGACATTTGCGGTTTTTAAGATCATTTGTTCACATTGCCATCATTTCTACTTTGAATTTGCATTTACACCGAGCGTTCGCAATTGAGCTGTAGGTCCGGTGTGTGTAAATTTGTACTATTTAGGATTCGATTTGTGATATGATTTGCAATTTGTAGCCTAATTGATGCGAATCGTTTAATCTAATATAAAATATTTGAATTTGTGTCCATGGTATTCTAATGACATTCTTTGAAAGTTTCTTCAC

Network for GWHGAAZE010487

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040
CFinderModule0067

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	2	139	1.80E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.014
	SRR3591707	mature leaf	0.176
	SRR3591708	Shoot apex	0.218
	SRR3591709	Stem	0.136
	SRR3591710	White floral bud	0.090
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.747
	SRR3591713	Yellow flower	0.064
SRP173429	SRR8316895	Juvenile bud stage	15.823
	SRR8316896	Juvenile bud stage	20.730
	SRR8316897	Juvenile bud stage	0.718
	SRR8316894	Third green stage	8.214
	SRR8316900	Third green stage	13.110
	SRR8316901	Third green stage	15.414
	SRR8316898	Complete white stage	7.588
	SRR8316899	Complete white stage	18.864
	SRR8316903	Complete white stage	16.159
	SRR8316902	Silver flowering stage	8.862
	SRR8316904	Silver flowering stage	11.632
	SRR8316905	Silver flowering stage	4.994
	SRR8316906	Gold flowering stage	13.387
	SRR8316907	Gold flowering stage	17.510
	SRR8316908	Gold flowering stage	4.715
SRP132670	SRR6706286	Control	10.480
	SRR6706287	Light intensity 50%	12.147
	SRR6706288	Light intensity 20%	13.035
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.216
	CNS0095593	Slightly white alabastrum(diploid) 2	20.580
	CNS0095594	Slightly white alabastrum(diploid) 3	18.474
	CNS0095595	Whole white alabastrum(diploid) 2	12.876
	CNS0095596	Whole white alabastrum(diploid) 3	12.332
	CNS0095597	Whole white alabastrum(diploid) 4	14.224
	CNS0095598	Silvery flower (diploied) 1	23.401
	CNS0095599	Silvery flower (diploied) 2	16.373
	CNS0095600	Silvery flower (diploied) 3	4.874
	CNS0095601	Golden flower (diploid) 1	17.647
	CNS0095602	Golden flower (diploid) 2	6.759
	CNS0095603	Golden flower (diploid) 3	6.373
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.343
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.567
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.626
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.363
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.719
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.583
	CNS0095610	Silvery flower (tetraploid) 1	0.595
	CNS0095611	Silvery flower (tetraploid) 2	0.733
	CNS0095612	Silvery flower (tetraploid) 3	1.080
	CNS0095613	Golden flower (tetraploid) 1	0.477
	CNS0095614	Golden flower (tetraploid) 2	0.849
	CNS0095615	Golden flower (tetraploid) 3	0.601
CRA001975	CRR073297	Stem 1	13.563
	CRR073298	Stem 2	9.040
	CRR073299	Stem 3	0.514
	CRR073300	Leaf 1	10.226
	CRR073301	Leaf 2	10.207
	CRR073302	Leaf 3	0.786
	CRR073303	Juvenile bud 1	1.349
	CRR073304	Juvenile bud 2	0.232
	CRR073305	Juvenile bud 3	1.386
	CRR073306	Third green 1	0.091
	CRR073307	Third green 2	0.081
	CRR073308	Third green 3	0.171
	CRR073309	Second white 1	0.191
	CRR073310	Second white 2	0.362
	CRR073311	Second white 3	0.213
	CRR073312	Silver flowering 1	0.669
	CRR073313	Silver flowering 2	0.073
	CRR073314	Silver flowering 3	0.081
	CRR073315	Gold flowering 1	0.945
	CRR073316	Gold flowering 2	1.434
	CRR073317	Gold flowering 3	0.388
	CRR073318	Tawny withering 1	2.163
	CRR073319	Tawny withering 2	6.273
	CRR073320	Tawny withering 3	2.507