Gene detail

Detail information of GWHGAAZE010570

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP25256.1	5.1622E-25	hypothetical protein JCGZ_20412 [Jatropha curcas]
Swissprot	tr\|Q9C6J3\|FB52_ARATH	2E-20	Putative F-box protein At1g50870
trEMBL	tr\|A0A067JMR0\|A0A067JMR0_JATCU	2E-25	Uncharacterized protein {ECO:0000313\|EMBL:KDP25256.1}
TAIR10	AT1G50870.1	1E-18	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	14453527	14456703	+
GWHAAZE00000003	mRNA	14453527	14456703	+
GWHAAZE00000003	exon	14453527	14453816	+
GWHAAZE00000003	exon	14453893	14454394	+
GWHAAZE00000003	exon	14454972	14455066	+
GWHAAZE00000003	exon	14456610	14456703	+
GWHAAZE00000003	CDS	14453527	14453816	+
GWHAAZE00000003	CDS	14453893	14454394	+
GWHAAZE00000003	CDS	14454972	14455066	+
GWHAAZE00000003	CDS	14456610	14456610	+
GWHAAZE00000003	three_prime_UTR	14456611	14456703	+

Transcript Sequence
>GWHTAAZE010582 ATGGGGAAAAGTACTGCATCATCATCTCCAATTCTGCCGGAAAAAATAATCTTCCAAATTCTGAAAGAGCTTCCTGTCAAAGCCCTTGTCAGATTTAGGGCTGTTTCCAAGCTATGGTGCTCCATTATCGACGATCCATTCTTCTTAGACTCTCATCGCACTCGCTCCCACACTCGCAATGGCGGCATTCGCATTTTATGTCAATATAGAGAGAATTTCAGGTTGAAAATTTACACTACGTACAGATCCCCAAGGAGGATCCCCTGTTCCTTTCCTCACCCTCCCAGATGGAAAAATTGTATATGGAACCCTATCACCAGACAAAGCATTGATCTCCCACCTAAAAGTATTGATGCAAATGGGGAGAGATGTTATGTTTTCCAAAGTAACTTGTTAGGGTTTGATTCTGTTACCAAACAATACAAAGTTGTTAACCTGTGCCATACTGTTTTTGGACAAATTATTCGCGCTGAGTTCAGGATTTTGACTCTAGGACGAGATTTGTACTGGAGAAATCTTGATTCTGTTCCGGAGAAATTGAATTTTAGGACGGGTTTCGGGGTATGTTGCGTTGATGATGTTTTATTTTGTTCAGGTTGGGTCGATAGCAATGAAGTGATAGTGGCATTTGAAGTTGGTCCTGAGAAGTTTAGAGTGATTCTGCTTCCCAATGGGGCGGATGCTAGTTCCATGAACAGCCATGTAATACAAGTGGGAGGGCGTTTGGGTTTTGTAATGGTTGATTATGCTAGAGCTGCAGAGGTTGATCTTGATGAATTGAAGAATGTTAAGTTGGCAAGTTTGATGGATCGGTTTGTGTTCGTTGTTATCATCTTAATAGTCCAAGTTCTTCATCTGGTTGAAGTTGTTTCTCTTCATCCAATTTGAGCTACCCAACCCACCATACCATATGATCTAGATGCAAACTGTAGCGACTCAGAAACTAGGGGTGGACATCCGATCCAATCCGGTAGTTTTTAG

Network for GWHGAAZE010570

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	12	46	3.10E-07
PF08268.13	FBA_3	189	256	4.30E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.471
	SRR3591706	second leaf	0.195
	SRR3591707	mature leaf	0.373
	SRR3591708	Shoot apex	0.654
	SRR3591709	Stem	0.518
	SRR3591710	White floral bud	0.051
	SRR3591711	White flower	0.665
	SRR3591712	Green floral bud	0.416
	SRR3591713	Yellow flower	0.192
SRP173429	SRR8316895	Juvenile bud stage	0.233
	SRR8316896	Juvenile bud stage	0.103
	SRR8316897	Juvenile bud stage	0.008
	SRR8316894	Third green stage	0.133
	SRR8316900	Third green stage	0.132
	SRR8316901	Third green stage	0.187
	SRR8316898	Complete white stage	0.243
	SRR8316899	Complete white stage	0.178
	SRR8316903	Complete white stage	0.071
	SRR8316902	Silver flowering stage	0.146
	SRR8316904	Silver flowering stage	0.034
	SRR8316905	Silver flowering stage	0.131
	SRR8316906	Gold flowering stage	0.128
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.231
SRP132670	SRR6706286	Control	0.253
	SRR6706287	Light intensity 50%	0.174
	SRR6706288	Light intensity 20%	0.252
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.164
	CNS0095593	Slightly white alabastrum(diploid) 2	0.277
	CNS0095594	Slightly white alabastrum(diploid) 3	0.534
	CNS0095595	Whole white alabastrum(diploid) 2	0.161
	CNS0095596	Whole white alabastrum(diploid) 3	0.086
	CNS0095597	Whole white alabastrum(diploid) 4	0.179
	CNS0095598	Silvery flower (diploied) 1	0.230
	CNS0095599	Silvery flower (diploied) 2	0.629
	CNS0095600	Silvery flower (diploied) 3	0.420
	CNS0095601	Golden flower (diploid) 1	0.621
	CNS0095602	Golden flower (diploid) 2	0.104
	CNS0095603	Golden flower (diploid) 3	0.180
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.083
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.053
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.141
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.049
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.045
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.025
	CNS0095610	Silvery flower (tetraploid) 1	0.067
	CNS0095611	Silvery flower (tetraploid) 2	0.061
	CNS0095612	Silvery flower (tetraploid) 3	0.040
	CNS0095613	Golden flower (tetraploid) 1	0.074
	CNS0095614	Golden flower (tetraploid) 2	0.060
	CNS0095615	Golden flower (tetraploid) 3	0.045
CRA001975	CRR073297	Stem 1	0.085
	CRR073298	Stem 2	0.017
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.453
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.366
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.044
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.043
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.357
	CRR073311	Second white 3	0.061
	CRR073312	Silver flowering 1	0.042
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.041
	CRR073319	Tawny withering 2	0.457
	CRR073320	Tawny withering 3	0.204