Gene detail

Detail information of GWHGAAZE010595

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP25256.1	1.09942E-20	hypothetical protein JCGZ_20412 [Jatropha curcas]
Swissprot	tr\|Q9T0J4\|FB249_ARATH	2E-18	Putative F-box protein At4g38870
trEMBL	tr\|A0A067JMR0\|A0A067JMR0_JATCU	4E-21	Uncharacterized protein {ECO:0000313\|EMBL:KDP25256.1}
TAIR10	AT1G46984.1	4E-17	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	14945584	14949318	-
GWHAAZE00000003	mRNA	14945584	14949318	-
GWHAAZE00000003	exon	14948371	14949318	-
GWHAAZE00000003	exon	14947070	14947175	-
GWHAAZE00000003	exon	14945584	14945870	-
GWHAAZE00000003	CDS	14948371	14949318	-
GWHAAZE00000003	CDS	14947070	14947175	-
GWHAAZE00000003	CDS	14945584	14945870	-

Transcript Sequence
>GWHTAAZE010607 ATGAAGTTGATGTCATACAAGAAAAAGATGGAGAAGAAGAGAGGGAAAAGTGCATCATCATTATCATCTCCATTTCTTCCACGAGAAATAATCCTCGAAATTCTCAAAGACGTTCCTGCCAAACCCCTACTTAGATTTAGGGTTGTTTCCAAGCTATGGTGCTCCATCATCGACGATCCAGTCTTTGTAGACTCTCATCACACTCGCTCCTACACTCGCACTGGCGGCATCCGCATTTTATGTCAATATGAATATGCAGAGGATTTGATCTTGAACATATACTCTACAGATCCCCAAGGAGGATCCCCTCTCCCTTTCCCCGCCCTCCCAGTTGGTATCCTTGGTTATCGCCATGATGACCATCATAATTATACTTTCAATCGTTTACATTCTGTTAATGGCTTAGTTTATAGAAAAAATTGCATATGGAACCCTAGCACCGGAGAGAGCATTGATCTTCCACCAATAATATTTGATGCTAATGGGAAGCGACGCTGTGTTTGTCAAAGAAACATGTTAGGGTTTGATTCTGTTACCAAACAATACAAAGTTGTTAACATGTGCGTTACCAGTTTTGGACAAATTAGACATGCTGAGTTCAGGATTTTGACTCTGGGACGAGATACGTATTGGAGAAATCTTGACTTTGTTCCGGAGATATTTTTTAGGACACATTCAGGGGTGTGTTGCATTGATGATATTATATTTTGTTCAAGTTGGGTTGATACTACTATAGTGATAGTGGCGTTTGAAGTTGGTCCCGAGAAGTTTAGAGTGATTCCGCTTCCCAATGGGGCGCACGGTAGATGCATGAACAGCCATATAATACAAGTGGGAGAGTGTTTGGGTTTCGTTACTGTTAATTATGCTACAGCGGGAGAGGTTGATGTTGATCAATTGATGAATGTTAAGGTGGTGGAAAGTCTAGATTATATTGAGGCGAGAGATATCAGTTTGCGCACTCCACAAGTTCACTACTATATATCTTCTTTCTTGCAAACTCATTGTCTTTCTTGGGCATTTCCTGATATGCCAATAGCCCGAGGTTTTCATGGTAGCTTCCCCGTCCCTGAGGATAGGTCTCCCTCTCTTAGTGGCTTTGATGTCCCGAATGTTCTCTTTAATAAGGTTGACTTGACCGGGCTTTTCACCGTAGAACTTTTACCCGTTCAACTGGAGCACAGCTATACTTTCATTGCTTTCACTAGAACCAGAGTCATAGGGGCACTTTTTGTTTTTCCTTCCTCAGTTCGTTTGGCGCTTCGAGGCTGTCTTCGACCGCTTGTCAACGAGAGATTGGACATCCCAGCCACAGAGAGTGGAAGTTCCAGAACAGGTGGC

Network for GWHGAAZE010595

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	26	62	1.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.056
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.369
	SRR8316896	Juvenile bud stage	0.487
	SRR8316897	Juvenile bud stage	0.090
	SRR8316894	Third green stage	0.158
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.050
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.007
	SRR6706287	Light intensity 50%	0.019
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.222
	CNS0095593	Slightly white alabastrum(diploid) 2	0.031
	CNS0095594	Slightly white alabastrum(diploid) 3	0.121
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.002
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.474
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.430
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.051
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.264
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.254
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.485
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.038
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.076
	CRR073298	Stem 2	0.225
	CRR073299	Stem 3	0.194
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.015
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000