Gene detail

Detail information of GWHGAAZE010609

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10828.1	1.4068E-124	unnamed protein product [Coffea canephora]
Swissprot	tr\|P27054\|CHI4_PHAVU	2E-108	Endochitinase PR4 (Precursor)
trEMBL	tr\|A0A068UT78\|A0A068UT78_COFCA	5E-125	Coffea canephora DH200=94 genomic scaffold, scaffold_48 {ECO:0000313\|EMBL:CDP10828.1}
TAIR10	AT3G54420.1	1E-94	homolog of carrot EP3-3 chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	15338302	15340146	+
GWHAAZE00000003	mRNA	15338302	15340146	+
GWHAAZE00000003	exon	15338302	15338656	+
GWHAAZE00000003	exon	15339734	15340146	+
GWHAAZE00000003	CDS	15338302	15338656	+
GWHAAZE00000003	CDS	15339734	15340146	+

Transcript Sequence
>GWHTAAZE010621 GTCTTGCCGGAATTGGTGGCCGGTCAGAACTGTGGGTGTGCCCCAGGCTTATGTTGTAGCCAGTATGGATTTTGCGGCACTACCAATGGGTTCTGTGGCCCGGGGTGTCAGGAGGGCCCTTGCATCTTGCCACCGGCCCCAAACAATGTCAGTGTAGCAGATATTGTGACAGATACATTTTTCAATGGAATCATTAATCAAACTACTGGACGTTGTGCTGGGAAGGGATTTTACACTAGAGCGGCATTTCTTAAAGCTTGTGATTCACATAGACCATTTGGAAGGACTGGCTCCATTGATGATTCTAAGCGAGAGATTGCTGCTTTCTTTGGACATGTCACACATGAGACTGGATACTTTTGCTATATAGATGAGATTGGTGGTCACAGTAAGAACTATTGCAATCGGAGTAACACGCAGTATCCCTGCGTACCCGGCAAGGGATATTACGGCCGAAGTCCTCTTCAGATCAAATGGAATTACAATTACGGACCGGCCGGGAATGCCATTGGCTTCAATGGTCTAAAGAACCCTGATTTTGTGTCCTCAAATGTGGTTGTTGCTTTTAAGACTGCCTTGTGGTTCTGGATGGAGAACGTTCACAAAATCATAACTTCTGGCCAAGGGTTTGGTGAAACCATTCGTGCTTTTAACGGCGGACGTGAATGTAATGGTGGAAGCTCAGGTACCGTCACTGCCCGAGTCAGTTTTTACACAGATTATTGTCGCCAATTTGGTATTTCTCCTGGCAATAATCTTCGATGCTAG

Network for GWHGAAZE010609

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00187.20	Chitin_bind_1	10	41	1.70E-07
PF00182.20	Glyco_hydro_19	55	199	6.40E-39
PF00182.20	Glyco_hydro_19	208	255	5.50E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004568	molecular_function	chitinase activity
GO:0008061	molecular_function	chitin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.440
	SRR3591706	second leaf	0.521
	SRR3591707	mature leaf	0.555
	SRR3591708	Shoot apex	0.133
	SRR3591709	Stem	60.466
	SRR3591710	White floral bud	0.594
	SRR3591711	White flower	0.458
	SRR3591712	Green floral bud	0.071
	SRR3591713	Yellow flower	0.384
SRP173429	SRR8316895	Juvenile bud stage	1.905
	SRR8316896	Juvenile bud stage	1.466
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	2.718
	SRR8316900	Third green stage	47.891
	SRR8316901	Third green stage	35.759
	SRR8316898	Complete white stage	34.180
	SRR8316899	Complete white stage	19.541
	SRR8316903	Complete white stage	16.460
	SRR8316902	Silver flowering stage	73.370
	SRR8316904	Silver flowering stage	47.377
	SRR8316905	Silver flowering stage	26.342
	SRR8316906	Gold flowering stage	141.267
	SRR8316907	Gold flowering stage	156.085
	SRR8316908	Gold flowering stage	91.346
SRP132670	SRR6706286	Control	91.416
	SRR6706287	Light intensity 50%	111.560
	SRR6706288	Light intensity 20%	163.658
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.373
	CNS0095593	Slightly white alabastrum(diploid) 2	2.596
	CNS0095594	Slightly white alabastrum(diploid) 3	1.603
	CNS0095595	Whole white alabastrum(diploid) 2	15.387
	CNS0095596	Whole white alabastrum(diploid) 3	17.573
	CNS0095597	Whole white alabastrum(diploid) 4	11.262
	CNS0095598	Silvery flower (diploied) 1	10.301
	CNS0095599	Silvery flower (diploied) 2	7.403
	CNS0095600	Silvery flower (diploied) 3	50.546
	CNS0095601	Golden flower (diploid) 1	16.497
	CNS0095602	Golden flower (diploid) 2	9.628
	CNS0095603	Golden flower (diploid) 3	10.302
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.054
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.068
CRA001975	CRR073297	Stem 1	5.203
	CRR073298	Stem 2	7.122
	CRR073299	Stem 3	5.217
	CRR073300	Leaf 1	39.414
	CRR073301	Leaf 2	31.005
	CRR073302	Leaf 3	88.455
	CRR073303	Juvenile bud 1	84.874
	CRR073304	Juvenile bud 2	161.615
	CRR073305	Juvenile bud 3	25.730
	CRR073306	Third green 1	170.239
	CRR073307	Third green 2	71.911
	CRR073308	Third green 3	84.518
	CRR073309	Second white 1	117.233
	CRR073310	Second white 2	131.475
	CRR073311	Second white 3	184.530
	CRR073312	Silver flowering 1	83.458
	CRR073313	Silver flowering 2	38.919
	CRR073314	Silver flowering 3	98.611
	CRR073315	Gold flowering 1	0.414
	CRR073316	Gold flowering 2	0.303
	CRR073317	Gold flowering 3	0.599
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.089