Gene detail

Detail information of GWHGAAZE010618

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10828.1	1.5328E-128	unnamed protein product [Coffea canephora]
Swissprot	tr\|P27054\|CHI4_PHAVU	3E-106	Endochitinase PR4 (Precursor)
trEMBL	tr\|A0A068UT78\|A0A068UT78_COFCA	6E-129	Coffea canephora DH200=94 genomic scaffold, scaffold_48 {ECO:0000313\|EMBL:CDP10828.1}
TAIR10	AT3G54420.1	7E-76	homolog of carrot EP3-3 chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	15738409	15739503	+
GWHAAZE00000003	mRNA	15738409	15739503	+
GWHAAZE00000003	exon	15738409	15738841	+
GWHAAZE00000003	exon	15739091	15739503	+
GWHAAZE00000003	CDS	15738409	15738841	+
GWHAAZE00000003	CDS	15739091	15739503	+

Transcript Sequence
>GWHTAAZE010630 ATGTCGCCCATTACCATGAAAATAAATTCACTAACAAAAATCATTCTTGTTACCGGAATCCTCGCCGGAGTTCTGCCGGAGCTGATAGTGGGTCAGAATTGTGGCTGTGCCCCGGACCTTTGCTGTAGCCAATATGGTTATTGTGGCACTGGTGAGGAGTATTGTGGGCAAAATTGCCGAGAAGGGCCGTGTACGGGGGCAGGCGGAACGCCGTCGACTCCAAGTGGAGCATCGGTGGCGGATATAGTGACAGATAGTTTTTTTAACGGGATTGTTAATAGTGATGGAAGTTGTGCCGGGAGTGGGTTTTATACGAGAGCCGTGTTTCTTGAGGCTGTTAGTTCGTTTCCTGAATTTGGAAGGACCGGCTCTGCTGATGATTCGAAGCGCGAGATCGCGGCTTTCTTTGCTCATGCTAGCCAAGAGACTTCACGGTTTTGCTTCATAGAAGAGATAAATGGCGCCTCTCAAGACTATTGTAAAGCAGACAACGCACAATATCCATGTGTACAAGGAAAGAAATATTACGGCCGTGGTCCCCTTCAACTCACATGGAACTACAACTATGGAGCTGCCGGAAAAAGTGTGGGTTTCGATGGACTAAACAATCCCGAAATCGTGGCCACTAATAATGGCATATCGTTTAGGGCATCCTTATGGTTTTGGATGACAAACGTTCATTCTATCATAACTTCTGGCCAAGGTTTTGGGGAAACAATTCGCGCAATTAATGGTCAACAAGAGTGCAATGGTGCAAAACCTGATACTGTTACTAGCCGCGTTAATTATTACACAAACTATTGTTCCCAACTTGGCGTTGCGCCCGGTGATAATCTTAGTTGCTAA

Network for GWHGAAZE010618

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00182.20	Glyco_hydro_19	82	226	5.50E-41
PF00182.20	Glyco_hydro_19	235	281	3.20E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0008061	molecular_function	chitin binding
GO:0004568	molecular_function	chitinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.467
	SRR3591706	second leaf	3.322
	SRR3591707	mature leaf	19.464
	SRR3591708	Shoot apex	0.637
	SRR3591709	Stem	0.552
	SRR3591710	White floral bud	2.217
	SRR3591711	White flower	5.046
	SRR3591712	Green floral bud	0.746
	SRR3591713	Yellow flower	1.485
SRP173429	SRR8316895	Juvenile bud stage	0.866
	SRR8316896	Juvenile bud stage	1.127
	SRR8316897	Juvenile bud stage	0.849
	SRR8316894	Third green stage	0.223
	SRR8316900	Third green stage	0.816
	SRR8316901	Third green stage	0.807
	SRR8316898	Complete white stage	1.477
	SRR8316899	Complete white stage	3.820
	SRR8316903	Complete white stage	1.109
	SRR8316902	Silver flowering stage	0.849
	SRR8316904	Silver flowering stage	0.370
	SRR8316905	Silver flowering stage	1.009
	SRR8316906	Gold flowering stage	1.120
	SRR8316907	Gold flowering stage	1.111
	SRR8316908	Gold flowering stage	0.947
SRP132670	SRR6706286	Control	12.261
	SRR6706287	Light intensity 50%	10.727
	SRR6706288	Light intensity 20%	4.664
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.054
	CNS0095593	Slightly white alabastrum(diploid) 2	1.869
	CNS0095594	Slightly white alabastrum(diploid) 3	3.541
	CNS0095595	Whole white alabastrum(diploid) 2	0.892
	CNS0095596	Whole white alabastrum(diploid) 3	0.277
	CNS0095597	Whole white alabastrum(diploid) 4	1.366
	CNS0095598	Silvery flower (diploied) 1	16.865
	CNS0095599	Silvery flower (diploied) 2	27.591
	CNS0095600	Silvery flower (diploied) 3	2.554
	CNS0095601	Golden flower (diploid) 1	36.656
	CNS0095602	Golden flower (diploid) 2	16.446
	CNS0095603	Golden flower (diploid) 3	14.998
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.524
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.434
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.772
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.299
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.312
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.545
	CNS0095610	Silvery flower (tetraploid) 1	1.152
	CNS0095611	Silvery flower (tetraploid) 2	1.213
	CNS0095612	Silvery flower (tetraploid) 3	1.671
	CNS0095613	Golden flower (tetraploid) 1	0.965
	CNS0095614	Golden flower (tetraploid) 2	2.571
	CNS0095615	Golden flower (tetraploid) 3	0.161
CRA001975	CRR073297	Stem 1	2.693
	CRR073298	Stem 2	2.718
	CRR073299	Stem 3	2.417
	CRR073300	Leaf 1	1.201
	CRR073301	Leaf 2	1.574
	CRR073302	Leaf 3	1.424
	CRR073303	Juvenile bud 1	0.670
	CRR073304	Juvenile bud 2	0.287
	CRR073305	Juvenile bud 3	1.904
	CRR073306	Third green 1	1.559
	CRR073307	Third green 2	0.416
	CRR073308	Third green 3	1.618
	CRR073309	Second white 1	1.039
	CRR073310	Second white 2	0.250
	CRR073311	Second white 3	0.298
	CRR073312	Silver flowering 1	0.642
	CRR073313	Silver flowering 2	1.697
	CRR073314	Silver flowering 3	0.925
	CRR073315	Gold flowering 1	54.427
	CRR073316	Gold flowering 2	49.141
	CRR073317	Gold flowering 3	95.494
	CRR073318	Tawny withering 1	3.944
	CRR073319	Tawny withering 2	0.431
	CRR073320	Tawny withering 3	1.404