Gene detail

Detail information of GWHGAAZE010619

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AET25429.1	3.0413E-127	class IV chitinase [Actinidia chinensis]
Swissprot	tr\|Q6K8R2\|CHI6_ORYSJ	6E-114	Chitinase 6 (Precursor)
trEMBL	tr\|G8IEM3\|G8IEM3_ACTCH	1E-127	Class IV chitinase {ECO:0000313\|EMBL:AET25429.1}
TAIR10	AT3G54420.1	2E-92	homolog of carrot EP3-3 chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	15749914	15751557	+
GWHAAZE00000003	mRNA	15749914	15751557	+
GWHAAZE00000003	exon	15749914	15750322	+
GWHAAZE00000003	exon	15751142	15751557	+
GWHAAZE00000003	CDS	15749914	15750322	+
GWHAAZE00000003	CDS	15751142	15751557	+

Transcript Sequence
>GWHTAAZE010631 ATGAGACGCAACCATAATTTGCTAGCCAAAATCATCATTTTGGCCGGAGTTCTCGCGGTAGCCTTGCCGGAGTTAGTTCTTGGTCAGGGTCAATGCGGATGCGCCTCGAATGAATGCTGTAGCAAGTACGGATATTGCGGGCAAGGTAGAGATTACTGTGGACCAGGGTGTCAAAGTGGCCCTTGTGACCCGCCCAACGGTGTGTCGGTCCCAAGTATTGTGACGGACGCATTTTTCAGTGGGATTGTTAATCAAGCTGCTGCGAGTTGTGCTGGAAGGGGATTTTACACGAGATCTGCATTTCTTGAGGCCCTTGGTTCGTATCCTCGATTCGGTAGAACTGGGACCGAGGACGATTCTAGGAGAGAAATCGCGGCTTTTTTCGCACATAGCGCTCACGAGACCGGAGGTTTTTGCTTCATAGAAGAGACAGGTGGTCCTAGTAAAGACTACTGTGACGAGACGAAAACTGAGTATCCATGTGCACCCAATAAGGGCTACTACGGTCGAGGTCCTCTTCAGCTCTCATGGAACTACAATTACGGACCAGCCGGAAAGAGTAATGGTTTTGACGGACTAAACAACCCTGAAATCGTGGCCACCAACTCCGCTGTCGCCTACAGAGCCGCATTGTGGTATTGGATGGAAAACGTTCACTCTATCATAACTTCCGGAAAAGGGTTTGGCGAAACCATTAGAGCTATTAACGGTCAACAAGAATGCAATAATGGTCCGAACTCTGGTGCTGTTGCCAGCCGCGTTGATTATTACACAAGATTTTGTAGCCAACTTGGTGTTTCGCCTGGCGAAAATCTACGATGTTAA

Network for GWHGAAZE010619

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00187.20	Chitin_bind_1	31	62	7.80E-07
PF00182.20	Glyco_hydro_19	74	217	5.60E-39
PF00182.20	Glyco_hydro_19	226	274	5.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004568	molecular_function	chitinase activity
GO:0008061	molecular_function	chitin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.350
	SRR3591706	second leaf	80.897
	SRR3591707	mature leaf	146.479
	SRR3591708	Shoot apex	56.252
	SRR3591709	Stem	63.488
	SRR3591710	White floral bud	107.200
	SRR3591711	White flower	148.281
	SRR3591712	Green floral bud	105.886
	SRR3591713	Yellow flower	100.626
SRP173429	SRR8316895	Juvenile bud stage	64.028
	SRR8316896	Juvenile bud stage	75.897
	SRR8316897	Juvenile bud stage	29.040
	SRR8316894	Third green stage	18.093
	SRR8316900	Third green stage	34.997
	SRR8316901	Third green stage	37.506
	SRR8316898	Complete white stage	48.211
	SRR8316899	Complete white stage	86.389
	SRR8316903	Complete white stage	36.638
	SRR8316902	Silver flowering stage	49.173
	SRR8316904	Silver flowering stage	44.896
	SRR8316905	Silver flowering stage	30.124
	SRR8316906	Gold flowering stage	135.192
	SRR8316907	Gold flowering stage	137.231
	SRR8316908	Gold flowering stage	121.934
SRP132670	SRR6706286	Control	194.518
	SRR6706287	Light intensity 50%	129.386
	SRR6706288	Light intensity 20%	95.099
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.377
	CNS0095593	Slightly white alabastrum(diploid) 2	39.614
	CNS0095594	Slightly white alabastrum(diploid) 3	52.010
	CNS0095595	Whole white alabastrum(diploid) 2	22.716
	CNS0095596	Whole white alabastrum(diploid) 3	8.817
	CNS0095597	Whole white alabastrum(diploid) 4	15.357
	CNS0095598	Silvery flower (diploied) 1	68.582
	CNS0095599	Silvery flower (diploied) 2	54.090
	CNS0095600	Silvery flower (diploied) 3	38.669
	CNS0095601	Golden flower (diploid) 1	102.402
	CNS0095602	Golden flower (diploid) 2	55.998
	CNS0095603	Golden flower (diploid) 3	55.587
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.878
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.635
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.826
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.469
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.877
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.347
	CNS0095610	Silvery flower (tetraploid) 1	43.660
	CNS0095611	Silvery flower (tetraploid) 2	11.395
	CNS0095612	Silvery flower (tetraploid) 3	42.039
	CNS0095613	Golden flower (tetraploid) 1	41.248
	CNS0095614	Golden flower (tetraploid) 2	76.229
	CNS0095615	Golden flower (tetraploid) 3	9.371
CRA001975	CRR073297	Stem 1	64.977
	CRR073298	Stem 2	56.291
	CRR073299	Stem 3	26.332
	CRR073300	Leaf 1	22.116
	CRR073301	Leaf 2	55.025
	CRR073302	Leaf 3	36.709
	CRR073303	Juvenile bud 1	7.713
	CRR073304	Juvenile bud 2	11.123
	CRR073305	Juvenile bud 3	19.143
	CRR073306	Third green 1	44.200
	CRR073307	Third green 2	26.814
	CRR073308	Third green 3	33.806
	CRR073309	Second white 1	46.275
	CRR073310	Second white 2	32.413
	CRR073311	Second white 3	17.654
	CRR073312	Silver flowering 1	10.311
	CRR073313	Silver flowering 2	18.709
	CRR073314	Silver flowering 3	10.983
	CRR073315	Gold flowering 1	87.634
	CRR073316	Gold flowering 2	105.627
	CRR073317	Gold flowering 3	215.125
	CRR073318	Tawny withering 1	22.118
	CRR073319	Tawny withering 2	22.873
	CRR073320	Tawny withering 3	6.904