Gene detail

Detail information of GWHGAAZE010622

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABJ74186.1	8.5177E-134	chitinase-like protein [Artemisia annua]
Swissprot	tr\|P27054\|CHI4_PHAVU	2E-107	Endochitinase PR4 (Precursor)
trEMBL	tr\|A0A3A1\|A0A3A1_ARTAN	3E-134	Chitinase-like protein {ECO:0000313\|EMBL:ABJ74186.1} (Fragment)
TAIR10	AT3G54420.1	7E-99	homolog of carrot EP3-3 chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	15763590	15769836	-
GWHAAZE00000003	mRNA	15763590	15769836	-
GWHAAZE00000003	exon	15769719	15769836	-
GWHAAZE00000003	exon	15764334	15764585	-
GWHAAZE00000003	exon	15763590	15763999	-
GWHAAZE00000003	CDS	15769719	15769836	-
GWHAAZE00000003	CDS	15764334	15764585	-
GWHAAZE00000003	CDS	15763590	15763999	-

Transcript Sequence
>GWHTAAZE010634 ATGTCAACTATCACTATGAGGCCAAATCTCTTAGCAAAAGTTATTATTCTCGCCGGACTTCTGGCCGGAGCCTTTCCAGAGTTTATTGCCGGCCAGAACTGTGGCTGTACTGCGGACTGTTGTCAGAGTGGCCCTTGTTTTGCACCGCCAGCTACTAATGATGTTTCGGTGGCAAATATTGTTACTGATGCGTTCTTTAATGGGATAGTCGATCAAGCAGCCGAGGGTTGTGCCGGAAAGGGCTTTTTCACGCGGGCTGCATTTCTTGAAGCCCTTAATTTTTATACACAATTTGGTAGAGTTGGGTCTGAGGATGACTCTAAGCGTGAGATCGCAGCTTTCTTTGGACATGTCACACACGAGACTGGACACTTTTGCTACATAGAAGAGATAGATGGTCCATCAAAGGACTATTGCGACGAAGGAAACACTCAATATCCATGTGCACCAAACAAGGGCTATTACGGCCGTGGTCCAATTCAACTCTCATGGAATTACAATTACGGTCCAGCCGGAAGTAGCATTGGCTTTGACGGACTAAACAACCCTGAAATTGTGGCATCTGACCCGGTTGTGTCATTTCGGACTGCCTTGTGGTATTGGATGAACAGAGTTCACTCTATTTTTACTTCTGGCCAAGGGTTTGGGGCCACCATCCGCGCCATTAACGGAATTGAGTGCGATGGTGGAAACCCTAATACTGTCACTGCCCGTGTTCAATATTACACCGAATATTGTAATCAACTCGGTGTTTCTCCGGGAGATAATCTTCGATGCTAG

Network for GWHGAAZE010622

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00182.20	Glyco_hydro_19	60	204	3.40E-40
PF00182.20	Glyco_hydro_19	213	259	2.50E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004568	molecular_function	chitinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.683
	SRR3591706	second leaf	8.070
	SRR3591707	mature leaf	3.532
	SRR3591708	Shoot apex	4.487
	SRR3591709	Stem	34.261
	SRR3591710	White floral bud	6.532
	SRR3591711	White flower	18.481
	SRR3591712	Green floral bud	5.522
	SRR3591713	Yellow flower	60.336
SRP173429	SRR8316895	Juvenile bud stage	2.446
	SRR8316896	Juvenile bud stage	1.317
	SRR8316897	Juvenile bud stage	10.120
	SRR8316894	Third green stage	1.227
	SRR8316900	Third green stage	0.386
	SRR8316901	Third green stage	0.543
	SRR8316898	Complete white stage	0.264
	SRR8316899	Complete white stage	1.989
	SRR8316903	Complete white stage	0.289
	SRR8316902	Silver flowering stage	3.816
	SRR8316904	Silver flowering stage	3.554
	SRR8316905	Silver flowering stage	2.198
	SRR8316906	Gold flowering stage	24.358
	SRR8316907	Gold flowering stage	11.602
	SRR8316908	Gold flowering stage	135.412
SRP132670	SRR6706286	Control	0.630
	SRR6706287	Light intensity 50%	2.123
	SRR6706288	Light intensity 20%	0.768
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.502
	CNS0095593	Slightly white alabastrum(diploid) 2	2.379
	CNS0095594	Slightly white alabastrum(diploid) 3	2.881
	CNS0095595	Whole white alabastrum(diploid) 2	1.026
	CNS0095596	Whole white alabastrum(diploid) 3	0.084
	CNS0095597	Whole white alabastrum(diploid) 4	1.389
	CNS0095598	Silvery flower (diploied) 1	4.070
	CNS0095599	Silvery flower (diploied) 2	3.366
	CNS0095600	Silvery flower (diploied) 3	2.832
	CNS0095601	Golden flower (diploid) 1	3.751
	CNS0095602	Golden flower (diploid) 2	4.595
	CNS0095603	Golden flower (diploid) 3	4.791
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.554
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.187
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.592
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.112
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.327
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.548
	CNS0095610	Silvery flower (tetraploid) 1	19.023
	CNS0095611	Silvery flower (tetraploid) 2	1.750
	CNS0095612	Silvery flower (tetraploid) 3	8.640
	CNS0095613	Golden flower (tetraploid) 1	23.270
	CNS0095614	Golden flower (tetraploid) 2	46.011
	CNS0095615	Golden flower (tetraploid) 3	2.373
CRA001975	CRR073297	Stem 1	0.233
	CRR073298	Stem 2	0.077
	CRR073299	Stem 3	0.064
	CRR073300	Leaf 1	0.101
	CRR073301	Leaf 2	0.614
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.056
	CRR073304	Juvenile bud 2	0.209
	CRR073305	Juvenile bud 3	0.235
	CRR073306	Third green 1	0.624
	CRR073307	Third green 2	0.466
	CRR073308	Third green 3	0.954
	CRR073309	Second white 1	0.032
	CRR073310	Second white 2	1.186
	CRR073311	Second white 3	0.729
	CRR073312	Silver flowering 1	4.939
	CRR073313	Silver flowering 2	2.250
	CRR073314	Silver flowering 3	2.849
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.343
	CRR073317	Gold flowering 3	0.681
	CRR073318	Tawny withering 1	0.667
	CRR073319	Tawny withering 2	6.279
	CRR073320	Tawny withering 3	0.000