Detail information of GWHGAAZE010671


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011090165.10PREDICTED: serine--glyoxylate aminotransferase [Sesamum indicum]
Swissprottr|Q56YA5|SGAT_ARATH0Serine--glyoxylate aminotransferase
trEMBLtr|B9HP22|B9HP22_POPTR0Aminotransferase 2 family protein {ECO:0000313|EMBL:EEE87326.1}
TAIR10AT2G13360.20alanine:glyoxylate aminotransferase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene1878488418789236+
GWHAAZE00000003mRNA1878488418789236+
GWHAAZE00000003exon1878488418785094+
GWHAAZE00000003exon1878599718786281+
GWHAAZE00000003exon1878695218787322+
GWHAAZE00000003exon1878782618787863+
GWHAAZE00000003exon1878794818788158+
GWHAAZE00000003exon1878909918789236+
GWHAAZE00000003CDS1878488418785094+
GWHAAZE00000003CDS1878599718786281+
GWHAAZE00000003CDS1878695218787322+
GWHAAZE00000003CDS1878782618787863+
GWHAAZE00000003CDS1878794818788158+
GWHAAZE00000003CDS1878909918789236+
Transcript Sequence

Network for GWHGAAZE010671

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00266.20Aminotran_5142896.50E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00830AGXT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Alanine, aspartate and glutamate metabolismmap00250
Glycine, serine and threonine metabolismmap00260
Peroxisomemap04146

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf106.972
SRR3591706second leaf653.926
SRR3591707mature leaf1284.349
SRR3591708Shoot apex174.406
SRR3591709Stem214.501
SRR3591710White floral bud15.916
SRR3591711White flower43.784
SRR3591712Green floral bud15.203
SRR3591713Yellow flower45.614
SRP173429 SRR8316895Juvenile bud stage 41.538
SRR8316896Juvenile bud stage 50.108
SRR8316897Juvenile bud stage 23.775
SRR8316894Third green stage 14.877
SRR8316900Third green stage 45.206
SRR8316901Third green stage 36.901
SRR8316898Complete white stage 29.923
SRR8316899Complete white stage 68.065
SRR8316903Complete white stage 43.506
SRR8316902Silver flowering stage19.698
SRR8316904Silver flowering stage27.821
SRR8316905Silver flowering stage13.434
SRR8316906Gold flowering stage 37.411
SRR8316907Gold flowering stage 39.419
SRR8316908Gold flowering stage 30.169
SRP132670SRR6706286Control67.541
SRR6706287Light intensity 50%51.488
SRR6706288Light intensity 20%52.451
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.987
CNS0095593Slightly white alabastrum(diploid) 217.494
CNS0095594Slightly white alabastrum(diploid) 322.601
CNS0095595Whole white alabastrum(diploid) 219.026
CNS0095596Whole white alabastrum(diploid) 318.752
CNS0095597Whole white alabastrum(diploid) 419.835
CNS0095598Silvery flower (diploied) 160.164
CNS0095599Silvery flower (diploied) 265.721
CNS0095600Silvery flower (diploied) 3123.066
CNS0095601Golden flower (diploid) 194.451
CNS0095602Golden flower (diploid) 2135.499
CNS0095603Golden flower (diploid) 3133.729
CNS0095604Slightly white alabastrum(tetraploid) 128.708
CNS0095605Slightly white alabastrum(tetraploid) 227.833
CNS0095606Slightly white alabastrum(tetraploid) 342.707
CNS0095607Whole white alabastrum(tetraploid) 119.084
CNS0095608Whole white alabastrum(tetraploid) 221.721
CNS0095609Whole white alabastrum(tetraploid) 333.353
CNS0095610Silvery flower (tetraploid) 1169.808
CNS0095611Silvery flower (tetraploid) 2321.495
CNS0095612Silvery flower (tetraploid) 3141.137
CNS0095613Golden flower (tetraploid) 1111.732
CNS0095614Golden flower (tetraploid) 2193.194
CNS0095615Golden flower (tetraploid) 3188.838
CRA001975CRR073297Stem 176.945
CRR073298Stem 262.860
CRR073299Stem 397.356
CRR073300Leaf 130.775
CRR073301Leaf 235.499
CRR073302Leaf 332.771
CRR073303Juvenile bud 138.959
CRR073304Juvenile bud 229.015
CRR073305Juvenile bud 355.074
CRR073306Third green 112.278
CRR073307Third green 211.313
CRR073308Third green 312.740
CRR073309Second white 128.594
CRR073310Second white 223.134
CRR073311Second white 311.254
CRR073312Silver flowering 117.336
CRR073313Silver flowering 222.193
CRR073314Silver flowering 318.468
CRR073315Gold flowering 1964.819
CRR073316Gold flowering 21097.909
CRR073317Gold flowering 31150.028
CRR073318Tawny withering 187.012
CRR073319Tawny withering 275.998
CRR073320Tawny withering 350.285