Gene detail

Detail information of GWHGAAZE010672

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011084127.1	4.5258E-86	PREDICTED: calmodulin-like protein 3 [Sesamum indicum]
Swissprot	tr\|O22845\|CML5_ARATH	1E-73	Calmodulin-like protein 5
trEMBL	tr\|A0A068UNE4\|A0A068UNE4_COFCA	4E-84	Coffea canephora DH200=94 genomic scaffold, scaffold_42 {ECO:0000313\|EMBL:CDP10060.1}
TAIR10	AT3G07490.1	9E-56	ARF-GAP domain 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	18796842	18797294	+
GWHAAZE00000003	mRNA	18796842	18797294	+
GWHAAZE00000003	exon	18796842	18797294	+
GWHAAZE00000003	CDS	18796842	18797294	+

Transcript Sequence
>GWHTAAZE010684 ATGGACCCCGATGAGCTTAAAAGAGTTTTTCAAATGTTTGATCGAAATGGAGACGGAAGAATCTCAAAGCAAGAACTAAAGGATTCATTAGAGAACATGGGGATCTCCATCCCCGAGGAAGAGTTGACACAAATGATCGAGAAGATAGACGTGAATGGCGATGGTTGTGTCGACATTGATGAATTCGGTGCTTTGTATCAATCCATAATGGATGGACGTGATGAGGACGAAGATATGAGGGAGGCTTTTAATGTTTTTGATCAAAATGGTGACGGGTTTATCACCGTGGACGAGTTGAAATCGGTCTTGGCATCCCTTGGGTTGAAGCAAGGGAAGACGGCGGAGGATTGCAGGATTATGATCACGAAAGTTGATGCAGATGGAGATGGGAGAGTGGATTTTAAGGAGTTCAAGGAGATGATGAGAAAGGGTGGTTTTGCAGCTTTGAGTTGA

Network for GWHGAAZE010672

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.7	EF-hand_7	5	67	1.50E-15
PF13499.7	EF-hand_7	77	142	4.80E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13448	CML	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.109
	SRR3591709	Stem	0.054
	SRR3591710	White floral bud	28.603
	SRR3591711	White flower	0.866
	SRR3591712	Green floral bud	33.578
	SRR3591713	Yellow flower	1.711
SRP173429	SRR8316895	Juvenile bud stage	0.783
	SRR8316896	Juvenile bud stage	0.516
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.667
	SRR8316900	Third green stage	21.592
	SRR8316901	Third green stage	15.522
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.687
	SRR8316904	Silver flowering stage	0.521
	SRR8316905	Silver flowering stage	0.298
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	9.800
	SRR6706287	Light intensity 50%	11.958
	SRR6706288	Light intensity 20%	10.107
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.315
	CNS0095593	Slightly white alabastrum(diploid) 2	3.217
	CNS0095594	Slightly white alabastrum(diploid) 3	2.930
	CNS0095595	Whole white alabastrum(diploid) 2	42.109
	CNS0095596	Whole white alabastrum(diploid) 3	46.738
	CNS0095597	Whole white alabastrum(diploid) 4	66.419
	CNS0095598	Silvery flower (diploied) 1	0.867
	CNS0095599	Silvery flower (diploied) 2	7.112
	CNS0095600	Silvery flower (diploied) 3	0.384
	CNS0095601	Golden flower (diploid) 1	0.847
	CNS0095602	Golden flower (diploid) 2	0.731
	CNS0095603	Golden flower (diploid) 3	0.610
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.315
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.219
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	102.184
	CNS0095608	Whole white alabastrum(tetraploid) 2	154.079
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.078
	CNS0095610	Silvery flower (tetraploid) 1	2.195
	CNS0095611	Silvery flower (tetraploid) 2	6.949
	CNS0095612	Silvery flower (tetraploid) 3	13.397
	CNS0095613	Golden flower (tetraploid) 1	3.975
	CNS0095614	Golden flower (tetraploid) 2	0.362
	CNS0095615	Golden flower (tetraploid) 3	6.424
CRA001975	CRR073297	Stem 1	1.134
	CRR073298	Stem 2	0.247
	CRR073299	Stem 3	0.450
	CRR073300	Leaf 1	16.746
	CRR073301	Leaf 2	6.038
	CRR073302	Leaf 3	3.138
	CRR073303	Juvenile bud 1	15.422
	CRR073304	Juvenile bud 2	12.768
	CRR073305	Juvenile bud 3	0.201
	CRR073306	Third green 1	4.148
	CRR073307	Third green 2	7.239
	CRR073308	Third green 3	6.266
	CRR073309	Second white 1	1.202
	CRR073310	Second white 2	1.126
	CRR073311	Second white 3	1.006
	CRR073312	Silver flowering 1	1.805
	CRR073313	Silver flowering 2	0.668
	CRR073314	Silver flowering 3	1.915
	CRR073315	Gold flowering 1	2.107
	CRR073316	Gold flowering 2	0.468
	CRR073317	Gold flowering 3	0.469
	CRR073318	Tawny withering 1	3.235
	CRR073319	Tawny withering 2	3.471
	CRR073320	Tawny withering 3	4.931